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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0624700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF23 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0497) R2 : 0.000935
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0683 (0.105) R2dN8 : 0.00121 R2N8 : 0.000935
σ : 0.936
deviance : 401.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
382.88 0.919 3.29 -1.25 0.0229 -0.223 -1.04 2.96 -0.415 12.4 24.7 785 -- --
394.71 0.932 3.18 -0.324 0.0659 0.148 -0.788 -- -0.0617 16.4 26.58 1188 -- --
378.64 0.913 3.28 -1.05 0.123 -0.221 -- 1.76 -0.372 2.34 23.9 476 -- --
394.37 0.925 3.22 -0.505 0.146 -0.289 -- -- -0.188 2.54 21.1 165 -- --
379.45 0.912 3.27 -1.03 -- -0.189 -- 1.75 -0.354 -- 23.9 476 -- --
396.19 0.933 3.19 -0.366 0.0398 -- 0.857 -- -0.106 4.35 -- -- -- --
398.16 0.934 3.19 -0.374 0.0503 -- -- -- -0.111 2.29 -- -- -- --
395.13 0.926 3.2 -0.441 -- -0.25 -- -- -0.169 -- 21.11 173 -- --
399.55 0.931 3.19 -- 0.107 -0.227 -- -- -0.127 2.22 21.2 172 -- --
398.31 0.933 3.19 -0.372 -- -- -- -- -0.11 -- -- -- -- --
401.85 0.938 3.18 -- 0.0432 -- -- -- -0.0692 2.13 -- -- -- --
400.07 0.932 3.19 -- -- -0.189 -- -- -0.108 -- 21.12 170 -- --
401.96 0.936 3.18 -- -- -- -- -- -0.0683 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 374.57 humidity 90 10 < th dose dependent rect. 2 2
4 374.93 humidity 80 10 < th dose independent rect. 2 2
5 374.96 humidity 80 90 < th dose dependent rect. 2 1
8 374.99 humidity 80 90 < th dose independent rect. 2 1
38 377.35 temperature 20 90 > th dose dependent rect. 19 14
41 378.36 temperature 25 270 < th dose independent rect. 11 18
46 378.80 temperature 25 720 < th dose independent rect. 18 6
47 378.91 temperature 25 270 < th dose independent rect. 11 20
49 378.95 temperature 25 270 > th dose independent rect. 15 18
51 379.08 temperature 20 270 > th dose dependent rect. 16 17
81 380.39 temperature 20 10 > th dose dependent rect. 19 17
88 380.56 temperature 20 90 > th dose dependent sin 9 NA
90 380.63 temperature 25 720 > th dose independent rect. 19 1
96 380.73 humidity 80 1440 > th dose independent rect. 20 13
97 380.74 temperature 25 720 > th dose independent rect. 16 8
98 380.76 temperature 25 720 < th dose independent sin 14 NA
100 380.84 temperature 25 720 < th dose independent rect. 15 17
113 381.03 temperature 25 720 > th dose independent rect. 18 4
123 381.14 humidity 80 1440 < th dose independent rect. 20 13
131 381.22 temperature 25 720 < th dose independent rect. 17 16
146 381.34 temperature 25 30 > th dose independent rect. 19 17
161 381.49 temperature 25 30 < th dose independent rect. 23 18
162 381.50 temperature 25 720 > th dose independent sin 14 NA
174 381.61 temperature 25 720 > th dose independent rect. 15 21
180 381.68 temperature 25 90 > th dose independent rect. 19 14
199 381.81 temperature 25 30 < th dose independent rect. 3 23
205 381.85 humidity 80 270 < th dose independent rect. 24 1
209 381.85 humidity 80 270 < th dose dependent rect. 24 1
211 381.87 temperature 25 720 < th dose independent rect. 19 2
216 381.90 temperature 25 90 < th dose independent sin 9 NA
222 381.94 humidity 80 1440 > th dose independent rect. 20 8
223 381.95 temperature 25 30 < th dose independent rect. 22 22
253 382.05 radiation 10 10 < th dose independent rect. 11 5
257 382.07 temperature 20 10 > th dose dependent rect. 17 19
280 382.24 wind 1 90 < th dose dependent rect. 2 3
288 382.27 temperature 25 1440 < th dose independent rect. 23 13
294 382.30 temperature 25 90 < th dose dependent rect. 23 21
315 382.42 humidity 80 1440 < th dose independent rect. 21 1
324 382.45 humidity 80 1440 < th dose independent rect. 20 7
340 382.52 wind 3 90 < th dose independent rect. 18 3
358 382.63 wind 1 90 < th dose independent rect. 2 3
360 382.63 radiation 10 720 < th dose dependent rect. 9 4
367 382.67 temperature 20 30 > th dose dependent rect. 19 9
380 382.76 wind 9 10 > th dose dependent rect. 18 2
391 382.79 temperature 25 90 < th dose dependent rect. 14 21
400 382.84 wind 9 10 > th dose independent rect. 18 2
410 382.85 temperature 20 90 < th dose independent rect. 2 1
415 382.85 wind 3 90 < th dose dependent rect. 18 3
421 382.87 temperature 25 1440 > th dose independent rect. 23 13
426 382.89 temperature 25 270 < th dose dependent rect. 11 20
428 382.90 temperature 20 30 > th dose dependent rect. 19 3
439 382.92 temperature 25 90 < th dose dependent rect. 11 23
445 382.96 radiation 10 720 < th dose independent rect. 9 4
454 382.98 radiation 1 720 < th dose dependent rect. 17 8
504 383.19 temperature 25 10 < th dose independent rect. 3 14
506 383.19 temperature 25 720 < th dose independent rect. 15 22
510 383.20 radiation 10 270 < th dose independent rect. 11 8
519 383.23 radiation 20 10 < th dose dependent rect. 11 6
523 383.24 temperature 25 10 < th dose dependent rect. 22 23
540 383.33 temperature 25 1440 > th dose independent rect. 11 1
541 383.33 temperature 25 1440 < th dose independent rect. 11 1
555 383.38 wind 1 90 < th dose independent rect. 2 1
590 383.48 wind 1 10 > th dose independent rect. 22 10
592 383.49 humidity 80 1440 > th dose independent sin 10 NA
595 383.49 radiation 20 10 < th dose dependent rect. 11 1
608 383.53 humidity 80 1440 > th dose independent rect. 21 1
624 383.55 temperature 25 720 > th dose independent rect. 11 20
627 383.56 temperature 25 720 < th dose independent rect. 3 21
646 383.61 temperature 30 270 < th dose dependent rect. 11 18
668 383.66 temperature 25 10 < th dose dependent rect. 15 21
688 383.70 temperature 10 10 > th dose dependent rect. 17 23
706 383.74 temperature 25 720 > th dose independent rect. 11 16
729 383.79 wind 3 1440 < th dose independent rect. 11 2
740 383.79 temperature 10 270 > th dose dependent rect. 15 21
745 383.81 radiation 10 10 < th dose independent rect. 11 1
750 383.82 humidity 80 1440 < th dose independent sin 10 NA
764 383.84 temperature 25 720 < th dose independent rect. 1 23
770 383.86 wind 3 1440 > th dose independent rect. 21 1
778 383.86 temperature 25 30 < th dose independent rect. 18 23
803 383.91 wind 5 1440 < th dose dependent rect. 21 1
804 383.91 atmosphere 1010 1440 > th dose dependent rect. 1 1
824 383.95 radiation 20 90 < th dose dependent rect. 10 6
828 383.97 wind 3 1440 > th dose independent rect. 11 2
856 384.01 temperature 25 720 < th dose independent no NA NA
860 384.01 wind 1 90 < th dose dependent rect. 2 1
874 384.05 wind 3 1440 > th dose independent rect. 10 4
881 384.06 wind 3 1440 < th dose independent rect. 21 1
888 384.09 wind 1 10 < th dose independent rect. 22 1
891 384.09 wind 1 10 < th dose dependent rect. 22 1
897 384.10 temperature 25 30 > th dose independent rect. 19 21
914 384.13 temperature 25 30 > th dose independent rect. 15 21
936 384.16 wind 3 10 > th dose dependent rect. 3 1
959 384.20 temperature 10 10 > th dose dependent rect. 19 23
975 384.24 temperature 20 90 < th dose dependent rect. 2 1
987 384.25 temperature 25 10 < th dose dependent rect. 1 23