BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0273800 Os06g0273800|AK111407
         (180 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0273800  Similar to Signal peptidase 18 subunit (Fragment)   333   4e-92
Os05g0297900  Similar to Signal peptidase 18 subunit (Fragment)   323   3e-89
Os02g0827900  Similar to Signal peptidase 18 subunit (Fragment)   218   1e-57

>Os06g0273800 Similar to Signal peptidase 18 subunit (Fragment)
          Length = 180

 Score =  333 bits (854), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 168/180 (93%), Positives = 168/180 (93%)

Query: 1   MGFIGDTIESIRSMQVRQVLAQIISLGMIVTSALIIWKGLIXXXXXXXXXXXXLSGSMEP 60
           MGFIGDTIESIRSMQVRQVLAQIISLGMIVTSALIIWKGLI            LSGSMEP
Sbjct: 1   MGFIGDTIESIRSMQVRQVLAQIISLGMIVTSALIIWKGLIVVTGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQESAEVDILTKGDNNF 120
           GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQESAEVDILTKGDNNF
Sbjct: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQESAEVDILTKGDNNF 120

Query: 121 GDDRLLYAHGQLWLQQHHIMGRAVGFLPYVGWVTIIMTEKPIIKYLLIGALGLLVITSKE 180
           GDDRLLYAHGQLWLQQHHIMGRAVGFLPYVGWVTIIMTEKPIIKYLLIGALGLLVITSKE
Sbjct: 121 GDDRLLYAHGQLWLQQHHIMGRAVGFLPYVGWVTIIMTEKPIIKYLLIGALGLLVITSKE 180



>Os05g0297900 Similar to Signal peptidase 18 subunit (Fragment)
          Length = 180

 Score =  323 bits (829), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 160/180 (88%), Positives = 166/180 (92%)

Query: 1   MGFIGDTIESIRSMQVRQVLAQIISLGMIVTSALIIWKGLIXXXXXXXXXXXXLSGSMEP 60
           MGFIGDT+ESIRS+Q+RQVLAQIISLGMIVTSALIIWKGL+            LSGSMEP
Sbjct: 1   MGFIGDTVESIRSIQIRQVLAQIISLGMIVTSALIIWKGLMVATGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQESAEVDILTKGDNNF 120
           GFKRGDILFLHMSKDPIRTGEIVVFN+DGREIPIVHRVIKVHER+ESAEVDILTKGDNNF
Sbjct: 61  GFKRGDILFLHMSKDPIRTGEIVVFNIDGREIPIVHRVIKVHEREESAEVDILTKGDNNF 120

Query: 121 GDDRLLYAHGQLWLQQHHIMGRAVGFLPYVGWVTIIMTEKPIIKYLLIGALGLLVITSKE 180
           GDDRLLYAHGQLWL QHHIMGRAVGFLPYVGWVTIIMTEKP IKYLLIGALGLLVITSKE
Sbjct: 121 GDDRLLYAHGQLWLHQHHIMGRAVGFLPYVGWVTIIMTEKPFIKYLLIGALGLLVITSKE 180



>Os02g0827900 Similar to Signal peptidase 18 subunit (Fragment)
          Length = 191

 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 124/151 (82%), Gaps = 1/151 (0%)

Query: 14  MQVRQVLAQIISLGMIVTSALIIWKGLIXXXXXXXXXXXXLSGSMEPGFKRGDILFLHMS 73
           MQ+R  L  +I+LGM+++SAL+IWKGLI            LS SME GF+RGDILFL MS
Sbjct: 1   MQIRHALVHLITLGMVISSALMIWKGLIIMTGSESPLVVVLSESMELGFERGDILFLQMS 60

Query: 74  KDPIRTGEIVVFNVDGREIPIVHRVIKVHERQESAEVDILTKGDNNFGDDRLLYAHGQLW 133
           K PIRTG+IVVFN DGREIPIVHRVI+VHER+++A+VD LTKGDNN  DDR+LY HGQLW
Sbjct: 61  KHPIRTGDIVVFN-DGREIPIVHRVIEVHERRDNAQVDFLTKGDNNPMDDRILYTHGQLW 119

Query: 134 LQQHHIMGRAVGFLPYVGWVTIIMTEKPIIK 164
           LQQHHIMGRA+G+LP  GWVT++MTEKP+IK
Sbjct: 120 LQQHHIMGRAIGYLPKAGWVTLVMTEKPVIK 150



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.144    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,205,886
Number of extensions: 192123
Number of successful extensions: 387
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 3
Length of query: 180
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 86
Effective length of database: 12,127,685
Effective search space: 1042980910
Effective search space used: 1042980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)