BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0264200 Os06g0264200|J013119A12
(481 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0264200 Zinc finger, B-box domain containing protein 766 0.0
Os02g0731700 Similar to CONSTANS-like 1 protein 273 3e-73
Os03g0711100 Similar to CONSTANS-like protein 182 4e-46
Os02g0148000 CCT domain containing protein 68 1e-11
>Os06g0264200 Zinc finger, B-box domain containing protein
Length = 481
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/466 (83%), Positives = 388/466 (83%)
Query: 1 MSSTXXXXXXXXXXXXXXXXCDGCLRRRARWYCAADDAFLCQGCDTSVHSANXXXXXXXX 60
MSST CDGCLRRRARWYCAADDAFLCQGCDTSVHSAN
Sbjct: 1 MSSTAKAAAAGAVGAKSARACDGCLRRRARWYCAADDAFLCQGCDTSVHSANPLARRHER 60
Query: 61 XXXXXXXXXXXXXXXXXXXXDEAVPAAWFKRKARTPRSHAAKSAAAFGQLLSRRLVVVPE 120
DEAVPAAWFKRKARTPRSHAAKSAAAFGQLLSRRLVVVPE
Sbjct: 61 LRLRPSSPPPLVPPSGSGRRDEAVPAAWFKRKARTPRSHAAKSAAAFGQLLSRRLVVVPE 120
Query: 121 AAAGSGGDSPEERKDEGEIVEEQEQLLYRVPIFDPALSEFCSPPPLEDAAAAVSCCNEDG 180
AAAGSGGDSPEERKDEGEIVEEQEQLLYRVPIFDPALSEFCSPPPLEDAAAAVSCCNEDG
Sbjct: 121 AAAGSGGDSPEERKDEGEIVEEQEQLLYRVPIFDPALSEFCSPPPLEDAAAAVSCCNEDG 180
Query: 181 AVENXXXXXXXXXXXXXXXLQFFPDGQANFGPTDAELREFAADMEALLGRGLDDGNDEDS 240
AVEN LQFFPDGQANFGPTDAELREFAADMEALLGRGLDDGNDEDS
Sbjct: 181 AVENPTKPSMTTTTATTPPLQFFPDGQANFGPTDAELREFAADMEALLGRGLDDGNDEDS 240
Query: 241 FCMETLGLIEPVDDDAGRVKVEADGDAGMTLAWCHELDTETSSGEMLDIDFDCGSPQAAT 300
FCMETLGLIEPVDDDAGRVKVEADGDAGMTLAWCHELDTETSSGEMLDIDFDCGSPQAAT
Sbjct: 241 FCMETLGLIEPVDDDAGRVKVEADGDAGMTLAWCHELDTETSSGEMLDIDFDCGSPQAAT 300
Query: 301 TPDEKVGSSGPXXXXXXXXXXXXXXXXXXXYEAIIESWGTSPWTDGERPHVKLDDSWPRD 360
TPDEKVGSSGP YEAIIESWGTSPWTDGERPHVKLDDSWPRD
Sbjct: 301 TPDEKVGSSGPAAADDDAQLQQSNLALSLNYEAIIESWGTSPWTDGERPHVKLDDSWPRD 360
Query: 361 YSVRATPCTPYASSHRILHNLAGTDDLLRRRAAVQGVWMAAAGVFGHGGEEQALTPRLGM 420
YSVRATPCTPYASSHRILHNLAGTDDLLRRRAAVQGVWMAAAGVFGHGGEEQALTPRLGM
Sbjct: 361 YSVRATPCTPYASSHRILHNLAGTDDLLRRRAAVQGVWMAAAGVFGHGGEEQALTPRLGM 420
Query: 421 DGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 466
DGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR
Sbjct: 421 DGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 466
>Os02g0731700 Similar to CONSTANS-like 1 protein
Length = 323
Score = 273 bits (697), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 171/349 (48%), Positives = 204/349 (58%), Gaps = 50/349 (14%)
Query: 128 DSPEERK-DEGEIVEEQE-QLLYRVPIFDPALSEFCSPPPLEDAAAAVSCCNEDGAVENX 185
+S +ERK DE EE E QLLYRVP+FDP+L+EFCSPPP++DAAAA S C ++ A +
Sbjct: 4 ESSDERKADEDGAHEELEGQLLYRVPVFDPSLAEFCSPPPIDDAAAASSSCFKEDAADGA 63
Query: 186 XXXXXXXXXXXXXXLQFFPDGQANFGPTDAELREFAADMEALLGRGLDDGND-EDSFCME 244
+Q PD NF PTDAELREFAADMEALLG+GLDD N+ +DSF ME
Sbjct: 64 VEDAKYPAAAASSPVQQLPDSFVNFEPTDAELREFAADMEALLGQGLDDSNELQDSFYME 123
Query: 245 TLGLIEPVDDDAGRVKVEADG----DAGMTLAWC--HELDTETSSGEMLDIDFDCGSPQA 298
TLGLI P +++GRVK+E DG ++ ++L C H + S ++LDIDF+C
Sbjct: 124 TLGLITPPVEESGRVKMELDGGVASNSRVSLPSCRAHPKPEDVESADVLDIDFNC----- 178
Query: 299 ATTPDEKVGSSGPXXXXXXXXXXXXXXXXXXXYEAIIESWGTSPWTDGERPHVKLDDSWP 358
T+PDE+ SS YEAIIESWG SPWTDG PH +LDD WP
Sbjct: 179 -TSPDEQ-KSSASNGAAADSQFFHRSLDLRLNYEAIIESWGNSPWTDGRPPHGQLDDFWP 236
Query: 359 RDYSVRATPCTPYASSHRILHNLAGTDDLLRRRAAVQGVWMAAAGVFGHGGEEQALTPRL 418
D H+ +G + M T R
Sbjct: 237 ND------------------HHYSGLWAAGGGGHGAEVGMM---------------TVRP 263
Query: 419 GMDG-GREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 466
MDG GREARV+RYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR
Sbjct: 264 RMDGPGREARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 312
>Os03g0711100 Similar to CONSTANS-like protein
Length = 421
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 198/462 (42%), Gaps = 117/462 (25%)
Query: 21 CDGCLRRRARWYCAADDAFLCQGCDTSVHSANXXXXXXXXXXXXXXXXXXXXXXXXXXX- 79
CDGC+RRRARW+C ADDAFLCQ CD SVHSAN
Sbjct: 20 CDGCMRRRARWHCPADDAFLCQACDASVHSANPLARRHHRVRLPSASSSPASSPRSAAAP 79
Query: 80 ---XDEAVPAAWF---KRKARTPRSH---AAKSAAAFGQLLSRRLVVVPEAAAGSGGDSP 130
D+ AW KR+ RTPR+ K A+ + + VP+ A G
Sbjct: 80 RAGSDDPDAPAWLHGLKRRPRTPRTKPGGGGKHDASAATVAAAAASAVPDLEAEESGIVG 139
Query: 131 EERKDEGEIVEEQEQLLYRVPIFDPALSEFCSPPPLEDAAAAVSCCNEDGAVENXXXXXX 190
+ D GE E+ E LLYRVP+FDP L+E +P V+ +E+ +E
Sbjct: 140 DTDHDVGE--EDDEDLLYRVPVFDPMLAELYNP---------VAADDEEQQIEQKPAARV 188
Query: 191 XXXXXXXXXL---QFFPDGQANFGPTDAELREFAADMEALLGRGLDDGNDEDSFCMETLG 247
DG + F D EL FAADME+LL G+D+G D+ F
Sbjct: 189 VPFSEPSPEFASGSVEADGLSGFDVPDMELASFAADMESLL-MGVDEGFDDLGF------ 241
Query: 248 LIEPVDDDAGRVKVEADGDAGMTLAWCHELDTETSSGEMLDIDFDCGSPQAATTPDEKVG 307
+DD+ VK++ D +D+DF SP A +E+
Sbjct: 242 ----LDDEKPHVKLDLD----------------------MDMDFASISPAPAPEREER-- 273
Query: 308 SSGPXXXXXXXXXXXXXXXXXXXYEAIIESW---GTSPWTDGERPHVKLDDSWPRDYSVR 364
YE +I+SW G SPW GERP +SWP D+
Sbjct: 274 -----------KRKRPEMILKLDYEGVIDSWARDGASPWFHGERPRFDPSESWP-DFP-- 319
Query: 365 ATPCTPYASSHRILHNLAGTDDLLRRRAAVQGVWMAAAGVFGHGGEEQALTPRLGMDGGR 424
AG+ GG A+T G G R
Sbjct: 320 -----------------AGS----------------------RGGLGAAVTAVTG--GER 338
Query: 425 EARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 466
EARVSRYREKRRTRLF+KKIRYEVRKLNAEKRPRMKGRFVKR
Sbjct: 339 EARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 380
>Os02g0148000 CCT domain containing protein
Length = 471
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 419 GMDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKG 461
G G REA V RY+EKRRTRLFSKKIRY+VRK+NA+ RPRMK
Sbjct: 423 GAGGIREASVMRYKEKRRTRLFSKKIRYQVRKVNADCRPRMKA 465
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,056,457
Number of extensions: 712566
Number of successful extensions: 2656
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2648
Number of HSP's successfully gapped: 7
Length of query: 481
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 376
Effective length of database: 11,553,331
Effective search space: 4344052456
Effective search space used: 4344052456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)