Os06g0264200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, B-box domain containing protein.
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Os06g0264200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, B-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 597.61 | 1.15 | 12.6 | -2.12 | 3.55 | -2.75 | 4.56 | -3.56 | 0.261 | 21.5 | 3.03 | 15 | 0.834 | -- |
| 615.13 | 1.16 | 12.5 | -1.99 | 3.66 | -2.7 | 5.53 | -- | 0.313 | 21.5 | 3.595 | 12 | 1.26 | -- |
| 620.19 | 1.16 | 12.6 | -2.29 | 3.44 | -2.68 | -- | -6.88 | 0.417 | 21.3 | 3.51 | 10 | 0.00745 | -- |
| 778.98 | 1.3 | 12.6 | -2.19 | 3.32 | -2.87 | -- | -- | 0.278 | 21.4 | 3.036 | 14 | 0.445 | -- |
| 885.37 | 1.39 | 12.3 | -1.7 | -- | -5.14 | -- | -6.43 | 0.803 | -- | 1.656 | 35 | 0.0081 | -- |
| 755.16 | 1.29 | 12.7 | -2.01 | 5.43 | -- | 6.75 | -- | 0.131 | 21.4 | -- | -- | -- | -- |
| 921.13 | 1.42 | 12.7 | -2.25 | 5.41 | -- | -- | -- | 0.123 | 21.4 | -- | -- | -- | -- |
| 978.8 | 1.46 | 12.5 | -2.1 | -- | -5.32 | -- | -- | 0.305 | -- | 0.7002 | 41 | 0.027 | -- |
| 915.38 | 1.41 | 12.5 | -- | 3.49 | -2.72 | -- | -- | 0.443 | 21.4 | 2.51 | 19 | 0.653 | -- |
| 2632.76 | 2.4 | 12.5 | -2.22 | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
| 1054.91 | 1.52 | 12.6 | -- | 5.41 | -- | -- | -- | 0.374 | 21.3 | -- | -- | -- | -- |
| 1103.87 | 1.55 | 12.4 | -- | -- | -5.31 | -- | -- | 0.533 | -- | 0.72 | 43 | 5.01e-07 | -- |
| 2763.15 | 2.45 | 12.5 | -- | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 619.65 | wind | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 2 | 624.39 | radiation | 10.0 | 10 | < th | dose dependent | sin | 8 | NA |
| 3 | 625.93 | wind | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 6 | 629.48 | radiation | 1.0 | 30 | > th | dose independent | sin | 7 | NA |
| 8 | 630.28 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 4 | 7 |
| 9 | 630.87 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 10 | 631.31 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 23 | 15 |
| 11 | 631.45 | radiation | 1.0 | 30 | < th | dose independent | sin | 7 | NA |
| 17 | 633.36 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 18 | 633.49 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 21 | 633.98 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 26 | 635.24 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 28 | 635.25 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 17 | 20 |
| 40 | 636.56 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 47 | 637.17 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 7 | 15 |
| 59 | 637.89 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 18 | 4 |
| 66 | 638.09 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 105 | 639.35 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 6 |
| 108 | 639.44 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 23 | 6 |
| 112 | 639.59 | wind | 3.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 137 | 640.27 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 138 | 640.31 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 161 | 640.86 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 185 | 641.44 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 192 | 641.51 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 199 | 641.57 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 205 | 641.62 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 218 | 641.79 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 23 | 9 |
| 300 | 642.73 | humidity | 70.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 306 | 642.77 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 350 | 643.05 | humidity | 80.0 | 1440 | < th | dose dependent | no | NA | NA |
| 378 | 643.29 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 389 | 643.43 | precipitation | 0.1 | 270 | > th | dose independent | sin | 4 | NA |
| 390 | 643.45 | humidity | 80.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 422 | 643.77 | precipitation | 0.1 | 270 | < th | dose independent | sin | 5 | NA |
| 424 | 643.77 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 5 | NA |
| 498 | 644.55 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 508 | 644.67 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 6 |
| 588 | 645.31 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 609 | 645.47 | humidity | 70.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 610 | 645.47 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 2 |
| 624 | 645.58 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 640 | 645.82 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 3 |
| 700 | 646.39 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 731 | 646.70 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 869 | 647.83 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 886 | 648.02 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 889 | 648.05 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 899 | 648.12 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 17 |
| 902 | 648.14 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 906 | 648.15 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 909 | 648.16 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 913 | 648.18 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 919 | 648.21 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 950 | 648.37 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 15 |
| 969 | 648.50 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 23 | 6 |
| 975 | 648.54 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 988 | 648.69 | humidity | 80.0 | 720 | > th | dose independent | rect. | 20 | 1 |