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Os03g0711100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CONSTANS-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.4 (0.0294) R2 : 0.88
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.99 (0.0939) R2dC : 0.183 R2C : 0.494
β3 : -2.92 (0.0945) R2dE : 0.386 R2E : 0.694
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.133 (0.0619) R2dN8 : 0.00154 R2N8 : -0.000742
σ : 0.552
deviance : 140.39
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_____
C
peak time of C : 7.57
E
wheather : temperature
threshold : 2.004
memory length : 218
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.4
open length of G : 8.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.49 0.555 13.4 0.0703 1.97 -3.07 -0.766 -0.0319 0.147 7.51 4.69 233 17.3 7.99
139.14 0.549 13.4 0.0572 1.96 -3.09 -0.717 -- 0.151 7.34 2.655 224 17.3 8.08
140.12 0.551 13.4 0.0592 2.01 -2.92 -- 0.44 0.158 7.6 3.03 223 17.3 8.05
140.37 0.552 13.4 0.0265 1.99 -2.94 -- -- 0.14 7.54 2.208 219 17.4 8.05
191.28 0.644 13.4 0.691 -- -3.86 -- 1.1 0.318 -- -5.883 295 15.4 8.92
232.95 0.716 13.3 -0.0136 4 -- -0.163 -- 0.0692 9.37 -- -- -- --
233.04 0.715 13.3 -0.0195 4 -- -- -- 0.0691 9.37 -- -- -- --
179.31 0.624 13.4 0.16 -- -4.21 -- -- 0.126 -- -2.396 311 15.2 8.74
140.39 0.552 13.4 -- 1.99 -2.92 -- -- 0.133 7.57 2.004 218 17.4 8.02
1170.44 1.6 13.4 -0.0411 -- -- -- -- 0.084 -- -- -- -- --
233.05 0.714 13.3 -- 4 -- -- -- 0.0712 9.37 -- -- -- --
172.47 0.612 13.5 -- -- -4.2 -- -- 0.0924 -- -26.34 353 14.6 8.87
1170.49 1.6 13.4 -- -- -- -- -- 0.0885 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.13 temperature 10.0 270 > th dose dependent rect. 17 8
2 146.59 precipitation 0.1 270 < th dose independent rect. 16 9
3 146.59 precipitation 0.1 270 < th dose dependent rect. 16 9
4 148.12 temperature 10.0 90 > th dose dependent rect. 19 8
5 150.67 wind 9.0 270 < th dose independent rect. 1 15
6 151.11 temperature 10.0 270 > th dose independent rect. 16 9
7 151.11 radiation 30.0 270 < th dose independent rect. 16 9
9 151.11 temperature 10.0 270 > th dose independent rect. 1 15
10 151.11 atmosphere 1015.0 270 < th dose independent rect. 1 15
12 152.80 precipitation 0.1 270 < th dose independent rect. 1 15
13 152.80 precipitation 0.1 270 < th dose dependent rect. 1 15
14 152.87 wind 9.0 270 < th dose independent rect. 16 9
18 153.79 radiation 40.0 270 < th dose dependent rect. 16 9
20 154.14 wind 9.0 270 < th dose independent rect. 12 17
21 154.25 atmosphere 995.0 270 > th dose independent rect. 1 15
24 154.77 humidity 50.0 270 > th dose independent rect. 1 15
27 155.76 precipitation 0.1 270 < th dose independent rect. 5 7
28 155.76 precipitation 0.1 270 < th dose dependent rect. 5 7
29 155.79 wind 1.0 270 > th dose independent rect. 16 9
30 155.87 temperature 10.0 270 > th dose independent rect. 5 7
31 155.87 atmosphere 995.0 270 > th dose independent rect. 5 7
32 155.87 atmosphere 1015.0 270 < th dose independent rect. 5 7
33 155.87 temperature 10.0 270 > th dose independent rect. 12 17
36 156.14 wind 9.0 270 < th dose independent rect. 5 7
51 158.09 radiation 1.0 90 < th dose dependent rect. 17 10
53 158.30 humidity 50.0 270 > th dose independent rect. 17 8
55 158.50 atmosphere 995.0 270 > th dose independent rect. 16 9
78 160.33 atmosphere 995.0 270 > th dose independent rect. 12 17
81 160.42 humidity 50.0 270 > th dose independent rect. 5 7
87 160.95 radiation 1.0 270 > th dose independent rect. 17 20
90 161.16 precipitation 0.1 90 < th dose independent rect. 19 8
91 161.16 precipitation 0.1 90 < th dose dependent rect. 19 8
92 161.33 precipitation 0.1 270 < th dose independent rect. 18 17
93 161.33 precipitation 0.1 270 < th dose dependent rect. 18 17
96 161.68 wind 9.0 90 < th dose independent rect. 3 16
98 162.04 precipitation 0.1 270 < th dose independent rect. 12 17
99 162.04 precipitation 0.1 270 < th dose dependent rect. 12 17
100 162.16 temperature 10.0 90 > th dose independent rect. 19 8
101 162.16 temperature 30.0 90 < th dose independent rect. 19 8
104 162.16 atmosphere 995.0 90 > th dose independent rect. 19 8
110 162.16 temperature 10.0 90 > th dose independent rect. 3 16
111 162.16 atmosphere 1015.0 90 < th dose independent rect. 3 16
120 162.43 wind 9.0 90 < th dose independent rect. 19 8
125 162.63 radiation 1.0 270 > th dose independent rect. 18 18
126 162.65 atmosphere 1010.0 270 < th dose independent rect. 11 7
150 163.46 precipitation 0.1 270 < th dose independent rect. 6 16
151 163.46 precipitation 0.1 270 < th dose dependent rect. 6 16
153 163.61 wind 9.0 270 < th dose independent rect. 11 7
163 164.17 wind 9.0 10 < th dose independent rect. 14 17
174 164.30 radiation 1.0 270 > th dose independent rect. 4 8
189 164.46 precipitation 0.1 270 < th dose independent rect. 5 20
190 164.46 precipitation 0.1 270 < th dose dependent rect. 5 20
200 164.67 temperature 15.0 270 > th dose independent rect. 11 7
205 164.73 temperature 10.0 270 > th dose independent rect. 18 17
226 165.02 wind 9.0 270 < th dose independent rect. 18 17
240 165.32 temperature 10.0 270 > th dose dependent rect. 1 16
241 165.33 precipitation 0.1 90 < th dose independent rect. 3 16
242 165.33 precipitation 0.1 90 < th dose dependent rect. 3 16
243 165.41 atmosphere 995.0 270 > th dose independent rect. 18 17
258 165.69 radiation 1.0 10 > th dose independent rect. 7 7
259 165.70 radiation 1.0 90 < th dose dependent rect. 9 18
261 165.74 wind 1.0 270 > th dose independent rect. 5 7
264 165.83 precipitation 0.1 10 < th dose independent rect. 7 7
265 165.83 precipitation 0.1 10 < th dose dependent rect. 7 7
267 165.90 temperature 30.0 270 < th dose independent rect. 5 7
270 166.00 temperature 10.0 10 > th dose independent rect. 7 7
272 166.00 atmosphere 995.0 10 > th dose independent rect. 7 7
273 166.00 atmosphere 1015.0 10 < th dose independent rect. 7 7
274 166.00 temperature 10.0 10 > th dose independent rect. 14 17
290 166.41 radiation 1.0 270 < th dose independent sin 7 NA
291 166.41 radiation 10.0 270 < th dose independent rect. 23 7
299 166.50 humidity 50.0 270 > th dose independent rect. 18 17
300 166.51 precipitation 0.1 270 < th dose independent rect. 11 7
301 166.51 precipitation 0.1 270 < th dose dependent rect. 11 7
315 166.73 wind 9.0 10 < th dose independent rect. 7 7
316 166.74 radiation 40.0 10 < th dose independent rect. 14 17
321 166.84 humidity 50.0 270 > th dose dependent rect. 22 8
351 167.17 radiation 1.0 270 > th dose independent sin 7 NA
352 167.17 radiation 20.0 270 < th dose dependent rect. 23 7
355 167.21 wind 9.0 90 < th dose independent rect. 13 6
360 167.25 radiation 1.0 270 < th dose independent rect. 1 4
364 167.25 radiation 10.0 270 < th dose dependent rect. 1 4
367 167.27 wind 7.0 270 < th dose independent rect. 22 8
375 167.36 wind 9.0 270 < th dose independent rect. 1 4
376 167.36 temperature 10.0 270 > th dose independent rect. 1 4
378 167.36 temperature 30.0 270 < th dose independent rect. 1 4
379 167.36 humidity 50.0 270 > th dose independent rect. 1 4
382 167.36 atmosphere 995.0 270 > th dose independent rect. 1 4
383 167.36 atmosphere 1010.0 270 < th dose independent rect. 1 4
389 167.36 temperature 10.0 270 > th dose independent rect. 5 20
394 167.43 temperature 10.0 270 > th dose independent rect. 23 7
395 167.43 temperature 30.0 270 < th dose independent rect. 23 7
396 167.43 humidity 50.0 270 > th dose independent rect. 23 7
399 167.43 atmosphere 995.0 270 > th dose independent rect. 23 7
403 167.43 temperature 10.0 270 > th dose independent rect. 6 17
412 167.53 radiation 1.0 270 < th dose dependent sin 6 NA
426 167.68 temperature 10.0 90 > th dose dependent rect. 3 16
489 168.15 precipitation 0.1 270 < th dose independent rect. 1 4
491 168.15 precipitation 0.1 270 < th dose dependent rect. 1 4
502 168.31 wind 1.0 10 > th dose independent rect. 7 7
503 168.34 precipitation 0.1 270 < th dose independent rect. 23 7
505 168.34 precipitation 0.1 270 < th dose dependent rect. 23 7
506 168.35 radiation 1.0 90 < th dose independent rect. 8 19
516 168.42 wind 1.0 270 > th dose independent rect. 11 7
519 168.44 temperature 10.0 90 > th dose independent rect. 13 6
521 168.44 atmosphere 1010.0 90 < th dose independent rect. 13 6
530 168.54 atmosphere 1015.0 270 < th dose independent rect. 17 8
563 168.92 humidity 90.0 90 < th dose independent rect. 19 18
570 169.03 precipitation 0.1 270 < th dose independent rect. 16 21
571 169.03 precipitation 0.1 270 < th dose dependent rect. 16 21
572 169.05 atmosphere 995.0 270 > th dose independent rect. 11 7
585 169.33 temperature 10.0 1440 > th dose independent rect. 8 7
588 169.33 temperature 10.0 1440 > th dose independent rect. 15 17
600 169.42 humidity 90.0 270 < th dose independent rect. 17 18
607 169.52 humidity 50.0 270 > th dose dependent rect. 1 4
626 169.66 temperature 10.0 270 > th dose dependent rect. 11 6
630 169.73 atmosphere 1015.0 270 < th dose independent rect. 23 7
637 169.78 atmosphere 1015.0 270 < th dose independent rect. 6 16
662 170.05 wind 1.0 90 > th dose independent rect. 13 6
663 170.05 precipitation 0.1 90 < th dose independent rect. 13 6
665 170.05 precipitation 0.1 90 < th dose dependent rect. 13 6
669 170.15 wind 1.0 90 > th dose independent rect. 19 8
675 170.20 temperature 10.0 270 > th dose dependent rect. 1 4
680 170.27 wind 9.0 270 < th dose independent rect. 5 20
687 170.37 atmosphere 995.0 90 > th dose independent rect. 3 16
690 170.42 wind 9.0 270 < th dose independent rect. 6 17
709 170.65 temperature 10.0 90 > th dose dependent rect. 13 6
743 170.94 atmosphere 1015.0 270 < th dose independent rect. 12 17
758 171.09 atmosphere 1015.0 90 < th dose independent rect. 19 8
763 171.14 wind 9.0 270 < th dose dependent rect. 1 4
765 171.17 precipitation 0.1 10 < th dose independent rect. 14 17
767 171.17 precipitation 0.1 10 < th dose dependent rect. 14 17
771 171.19 temperature 30.0 270 < th dose independent rect. 18 16
785 171.38 wind 1.0 270 > th dose independent rect. 1 4
787 171.42 wind 1.0 270 > th dose independent rect. 6 17
832 171.85 atmosphere 995.0 10 > th dose independent rect. 14 17
842 172.02 radiation 1.0 270 < th dose dependent rect. 1 13
895 172.31 wind 1.0 270 > th dose independent rect. 12 17
916 172.44 wind 7.0 270 < th dose independent rect. 13 3
920 172.44 humidity 50.0 270 > th dose independent rect. 12 17
933 172.54 radiation 1.0 270 < th dose independent rect. 1 13
967 172.91 humidity 90.0 270 < th dose independent rect. 18 4
976 172.99 humidity 90.0 270 < th dose independent rect. 17 6
978 173.00 atmosphere 1015.0 270 < th dose independent rect. 5 20
980 173.01 radiation 1.0 270 > th dose independent rect. 11 6