BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0711100 Os03g0711100|AK120563
         (421 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0711100  Similar to CONSTANS-like protein                    496   e-140
Os02g0731700  Similar to CONSTANS-like 1 protein                  114   2e-25
Os06g0264200  Zinc finger, B-box domain containing protein         87   3e-17

>Os03g0711100 Similar to CONSTANS-like protein
          Length = 421

 Score =  496 bits (1276), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 268/402 (66%), Positives = 268/402 (66%)

Query: 20  CDGCMRRRARWHCPADDAFLCQACDASVHSANPLARRHHRVRLXXXXXXXXXXXXXXXXX 79
           CDGCMRRRARWHCPADDAFLCQACDASVHSANPLARRHHRVRL                 
Sbjct: 20  CDGCMRRRARWHCPADDAFLCQACDASVHSANPLARRHHRVRLPSASSSPASSPRSAAAP 79

Query: 80  XXXXXXXXXXXWLHGLXXXXXXXXXXXXXXXXHDXXXXXXXXXXXXXXPDLEAEESGIVG 139
                      WLHGL                HD              PDLEAEESGIVG
Sbjct: 80  RAGSDDPDAPAWLHGLKRRPRTPRTKPGGGGKHDASAATVAAAAASAVPDLEAEESGIVG 139

Query: 140 DTDHDVGEEDDEDLLYRVPVFDPMLAELYNPVAADDEEQQIEQKPAARVVPFSEPSPEFA 199
           DTDHDVGEEDDEDLLYRVPVFDPMLAELYNPVAADDEEQQIEQKPAARVVPFSEPSPEFA
Sbjct: 140 DTDHDVGEEDDEDLLYRVPVFDPMLAELYNPVAADDEEQQIEQKPAARVVPFSEPSPEFA 199

Query: 200 SGSVEADGLSGFDVPDMELASFAADMESLLMGVXXXXXXXXXXXXXKPHVKLDLDMDMDF 259
           SGSVEADGLSGFDVPDMELASFAADMESLLMGV             KPHVKLDLDMDMDF
Sbjct: 200 SGSVEADGLSGFDVPDMELASFAADMESLLMGVDEGFDDLGFLDDEKPHVKLDLDMDMDF 259

Query: 260 ASISXXXXXXXXXXXXXXXXMILKLDYEGVIDSWARDGASPWFHGERPRFDPSESWPDFP 319
           ASIS                MILKLDYEGVIDSWARDGASPWFHGERPRFDPSESWPDFP
Sbjct: 260 ASISPAPAPEREERKRKRPEMILKLDYEGVIDSWARDGASPWFHGERPRFDPSESWPDFP 319

Query: 320 AGSRXXXXXXXXXXXXXEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVK 379
           AGSR             EREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVK
Sbjct: 320 AGSRGGLGAAVTAVTGGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVK 379

Query: 380 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAHGRYRF 421
                                             GAHGRYRF
Sbjct: 380 RAAALPPLPLPRHQHPPPPPPRALPPVPMMLAPRGAHGRYRF 421



>Os02g0731700 Similar to CONSTANS-like 1 protein
          Length = 323

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 123/297 (41%), Gaps = 67/297 (22%)

Query: 147 EEDDEDLLYRVPVFDPMLAELYNPVAADD----EEQQIEQKPAARVVPFSEPSPEFASGS 202
           EE +  LLYRVPVFDP LAE  +P   DD         ++  A   V  ++     AS  
Sbjct: 18  EELEGQLLYRVPVFDPSLAEFCSPPPIDDAAAASSSCFKEDAADGAVEDAKYPAAAASSP 77

Query: 203 VEA--DGLSGFDVPDMELASFAADMESLL-MGVXXXXXXX-----------XXXXXXKPH 248
           V+   D    F+  D EL  FAADME+LL  G+                           
Sbjct: 78  VQQLPDSFVNFEPTDAELREFAADMEALLGQGLDDSNELQDSFYMETLGLITPPVEESGR 137

Query: 249 VKLDLD----------------------------MDMDFASISXXXXXXXXXXXXXXXXM 280
           VK++LD                            +D+DF   S                 
Sbjct: 138 VKMELDGGVASNSRVSLPSCRAHPKPEDVESADVLDIDFNCTSPDEQKSSASNGAAADSQ 197

Query: 281 I------LKLDYEGVIDSWARDGASPWFHGERPRFDPSESWPDFPAGSRXXXXXXXXXXX 334
                  L+L+YE +I+SW   G SPW  G  P     + WP+    S            
Sbjct: 198 FFHRSLDLRLNYEAIIESW---GNSPWTDGRPPHGQLDDFWPNDHHYSGLWAAGGGGHGA 254

Query: 335 XXE------------REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVK 379
                          REARV+RYREKRRTRLF+KKIRYEVRKLNAEKRPRMKGRFVK
Sbjct: 255 EVGMMTVRPRMDGPGREARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 311



>Os06g0264200 Zinc finger, B-box domain containing protein
          Length = 481

 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 39/43 (90%)

Query: 20 CDGCMRRRARWHCPADDAFLCQACDASVHSANPLARRHHRVRL 62
          CDGC+RRRARW+C ADDAFLCQ CD SVHSANPLARRH R+RL
Sbjct: 21 CDGCLRRRARWYCAADDAFLCQGCDTSVHSANPLARRHERLRL 63




 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/42 (97%), Positives = 42/42 (100%)

Query: 338 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVK 379
           REARVSRYREKRRTRLF+KKIRYEVRKLNAEKRPRMKGRFVK
Sbjct: 424 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 465



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,034,618
Number of extensions: 360385
Number of successful extensions: 1441
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1436
Number of HSP's successfully gapped: 4
Length of query: 421
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 317
Effective length of database: 11,605,545
Effective search space: 3678957765
Effective search space used: 3678957765
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)