BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0256500 Os06g0256500|AK068236
(567 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0256500 Glucose-6-phosphate isomerase, cytosolic B (EC... 1106 0.0
Os03g0776000 Glucose-6-phosphate isomerase, cytosolic A (EC... 1073 0.0
D10411 187 2e-47
Os09g0465600 Similar to Glucose-6-phosphate isomerase-like ... 142 6e-34
Os08g0478800 Phosphoglucose isomerase (PGI) family protein 124 2e-28
>Os06g0256500 Glucose-6-phosphate isomerase, cytosolic B (EC 5.3.1.9) (GPI-B)
(Phosphoglucose isomerase B) (PGI-B) (Phosphohexose
isomerase B) (PHI- B)
Length = 567
Score = 1106 bits (2860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/567 (94%), Positives = 538/567 (94%)
Query: 1 MASSALICDTEQWKGLQAHVGAIQKTHLRDLMDDAERCKAMTAEYEGIFLDYSRQRATGE 60
MASSALICDTEQWKGLQAHVGAIQKTHLRDLMDDAERCKAMTAEYEGIFLDYSRQRATGE
Sbjct: 1 MASSALICDTEQWKGLQAHVGAIQKTHLRDLMDDAERCKAMTAEYEGIFLDYSRQRATGE 60
Query: 61 TMXXXXXXXXXXXXXXXXXXMFSGDKINSTENRSVLHVALRAPRDEVIKSDGVNVVPEVW 120
TM MFSGDKINSTENRSVLHVALRAPRDEVIKSDGVNVVPEVW
Sbjct: 61 TMEKLFKLAEAAKLKEKIEKMFSGDKINSTENRSVLHVALRAPRDEVIKSDGVNVVPEVW 120
Query: 121 GVKDKIKQFSETFRSGSWVGATGKALTNVVSVGIGGSFLGPLFVHAALQTDPEAAESAKG 180
GVKDKIKQFSETFRSGSWVGATGKALTNVVSVGIGGSFLGPLFVHAALQTDPEAAESAKG
Sbjct: 121 GVKDKIKQFSETFRSGSWVGATGKALTNVVSVGIGGSFLGPLFVHAALQTDPEAAESAKG 180
Query: 181 RQLRFLANVDPVDVARSIKDLDPETTLVVVVSKTFTTAETMLNARTLKEWIVSSLGPDAV 240
RQLRFLANVDPVDVARSIKDLDPETTLVVVVSKTFTTAETMLNARTLKEWIVSSLGPDAV
Sbjct: 181 RQLRFLANVDPVDVARSIKDLDPETTLVVVVSKTFTTAETMLNARTLKEWIVSSLGPDAV 240
Query: 241 AKHMIAVSTNLELVEKFGIDPKNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPIVQKFLE 300
AKHMIAVSTNLELVEKFGIDPKNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPIVQKFLE
Sbjct: 241 AKHMIAVSTNLELVEKFGIDPKNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPIVQKFLE 300
Query: 301 GAASIDKHFRSSSFEKNIPVLLGLLSVWNVSFLGYPARAILPYSQALEKFAPHIQQLSME 360
GAASIDKHFRSSSFEKNIPVLLGLLSVWNVSFLGYPARAILPYSQALEKFAPHIQQLSME
Sbjct: 301 GAASIDKHFRSSSFEKNIPVLLGLLSVWNVSFLGYPARAILPYSQALEKFAPHIQQLSME 360
Query: 361 SNGKGVSIDGVQLSFETGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLK 420
SNGKGVSIDGVQLSFETGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLK
Sbjct: 361 SNGKGVSIDGVQLSFETGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLK 420
Query: 421 GEIVSNHDELMSNFFAQPDALAYGKTPEQLHSEKVPEHLISHKTFQGNRXXXXXXXXXXX 480
GEIVSNHDELMSNFFAQPDALAYGKTPEQLHSEKVPEHLISHKTFQGNR
Sbjct: 421 GEIVSNHDELMSNFFAQPDALAYGKTPEQLHSEKVPEHLISHKTFQGNRPSLSLLLPSLS 480
Query: 481 AYEIGQLLSIYEHRIAVQGFLWGINSFDQWGVELGKSLASQVRKSLHASRMEGKPVQGFN 540
AYEIGQLLSIYEHRIAVQGFLWGINSFDQWGVELGKSLASQVRKSLHASRMEGKPVQGFN
Sbjct: 481 AYEIGQLLSIYEHRIAVQGFLWGINSFDQWGVELGKSLASQVRKSLHASRMEGKPVQGFN 540
Query: 541 SSTASLLTRYLAVEPSTPYNTTTMPKV 567
SSTASLLTRYLAVEPSTPYNTTTMPKV
Sbjct: 541 SSTASLLTRYLAVEPSTPYNTTTMPKV 567
>Os03g0776000 Glucose-6-phosphate isomerase, cytosolic A (EC 5.3.1.9) (GPI-A)
(Phosphoglucose isomerase A) (PGI-A) (Phosphohexose
isomerase A) (PHI- A)
Length = 567
Score = 1073 bits (2774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/567 (92%), Positives = 528/567 (93%)
Query: 1 MASSALICDTEQWKGLQAHVGAIQKTHLRDLMDDAERCKAMTAEYEGIFLDYSRQRATGE 60
MASSALICDTEQWKGLQAHVG IQKTHLR LM D ERCKAMTAEYEGI+LDYSRQRATGE
Sbjct: 1 MASSALICDTEQWKGLQAHVGEIQKTHLRHLMHDVERCKAMTAEYEGIYLDYSRQRATGE 60
Query: 61 TMXXXXXXXXXXXXXXXXXXMFSGDKINSTENRSVLHVALRAPRDEVIKSDGVNVVPEVW 120
TM MF GDKINSTENRSVLHVALRAPRDEVI S+GVNVVPEVW
Sbjct: 61 TMEKLFKLAEAAKLKEKIEKMFRGDKINSTENRSVLHVALRAPRDEVINSNGVNVVPEVW 120
Query: 121 GVKDKIKQFSETFRSGSWVGATGKALTNVVSVGIGGSFLGPLFVHAALQTDPEAAESAKG 180
GVKDKIKQFSETFRSGSWVGATGKALTNVVSVGIGGSFLGPLFVHAALQTDPEAAESAKG
Sbjct: 121 GVKDKIKQFSETFRSGSWVGATGKALTNVVSVGIGGSFLGPLFVHAALQTDPEAAESAKG 180
Query: 181 RQLRFLANVDPVDVARSIKDLDPETTLVVVVSKTFTTAETMLNARTLKEWIVSSLGPDAV 240
RQLRFLANVDPVDVARSIKDLDPETTLVVVVSKTFTTAETMLNARTLKEWIVSSLGPDAV
Sbjct: 181 RQLRFLANVDPVDVARSIKDLDPETTLVVVVSKTFTTAETMLNARTLKEWIVSSLGPDAV 240
Query: 241 AKHMIAVSTNLELVEKFGIDPKNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPIVQKFLE 300
AKHMIAVSTNLELVEKFGIDPKNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPIVQKFLE
Sbjct: 241 AKHMIAVSTNLELVEKFGIDPKNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPIVQKFLE 300
Query: 301 GAASIDKHFRSSSFEKNIPVLLGLLSVWNVSFLGYPARAILPYSQALEKFAPHIQQLSME 360
GAASIDKHFRSSSFEKNIPVLLGLLSVWNVSFLGYPARAILPYSQALEKFAPHIQQLSME
Sbjct: 301 GAASIDKHFRSSSFEKNIPVLLGLLSVWNVSFLGYPARAILPYSQALEKFAPHIQQLSME 360
Query: 361 SNGKGVSIDGVQLSFETGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLK 420
SNGKGVSIDGVQL FE+GEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLK
Sbjct: 361 SNGKGVSIDGVQLPFESGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLK 420
Query: 421 GEIVSNHDELMSNFFAQPDALAYGKTPEQLHSEKVPEHLISHKTFQGNRXXXXXXXXXXX 480
GEIVSNHDELMSNFFAQPDALAYGKTPEQLHSEKVPEHLI HKTFQGNR
Sbjct: 421 GEIVSNHDELMSNFFAQPDALAYGKTPEQLHSEKVPEHLIPHKTFQGNRPSLSLLLPSLS 480
Query: 481 AYEIGQLLSIYEHRIAVQGFLWGINSFDQWGVELGKSLASQVRKSLHASRMEGKPVQGFN 540
AYEIGQLL+IYEHRIAVQGFLWGINSFDQWGVELGKSLASQVRKSLHASR+EGKPV GFN
Sbjct: 481 AYEIGQLLAIYEHRIAVQGFLWGINSFDQWGVELGKSLASQVRKSLHASRVEGKPVLGFN 540
Query: 541 SSTASLLTRYLAVEPSTPYNTTTMPKV 567
SST SLLTRYLAVEPSTPYNTTT+PKV
Sbjct: 541 SSTTSLLTRYLAVEPSTPYNTTTLPKV 567
>D10411
Length = 96
Score = 187 bits (474), Expect = 2e-47, Method: Composition-based stats.
Identities = 87/92 (94%), Positives = 88/92 (95%)
Query: 316 KNIPVLLGLLSVWNVSFLGYPARAILPYSQALEKFAPHIQQLSMESNGKGVSIDGVQLSF 375
KNIPVLLGLLSVWNVSFLGYPARAILPYSQALE FA IQQLSMESNGKGVSIDGVQL F
Sbjct: 1 KNIPVLLGLLSVWNVSFLGYPARAILPYSQALEXFAXDIQQLSMESNGKGVSIDGVQLPF 60
Query: 376 ETGEIDFGEPGTNGQHSFYQLIHQGRVIPCDF 407
E+GEIDFGEPGTNGQHSFYQLIHQGRVIPCDF
Sbjct: 61 ESGEIDFGEPGTNGQHSFYQLIHQGRVIPCDF 92
>Os09g0465600 Similar to Glucose-6-phosphate isomerase-like protein (Fragment)
Length = 625
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 142/486 (29%), Positives = 217/486 (44%), Gaps = 52/486 (10%)
Query: 47 GIFLDYSRQRATGETMXXXXXXXXXXXXXXXXXXMFSGDKINSTENRSVLHVALRAP--- 103
G+F+D SR T E + + G N E R V H LR P
Sbjct: 99 GLFVDVSRMGFTEEFLRRMEPRMQRAFAAMRE--LEKGAIANPDEGRMVGHYWLRDPGLA 156
Query: 104 RDEVIKSDGVNVVPEVWGVKDKIKQFSETFRSGSWVGATGKA--LTNVVSVGIGGSFLGP 161
+ +++ ++ D+I FS+ SG + A T ++S+GIGGS LGP
Sbjct: 157 PNSFLRT-------KIETTLDRILAFSQDVVSGKIKPPSSPAGRFTQILSIGIGGSALGP 209
Query: 162 LFVHAALQTDPEAAESAKGRQLRFLANVDPVDVARSIKDLDPE--TTLVVVVSKTFTTAE 219
FV AL D ++RF+ N DP + I L PE +TLV+V+SK+ T E
Sbjct: 210 QFVSEALAPDNPPL------KIRFIDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPE 263
Query: 220 TMLNARTLKEWIVSSLGPDAVAKHMIAVSTNLELVEKFG-IDPKNA-FAFWDWVGGRYSV 277
T N + G D +K +AV+ L++ I+ A F +DWVGGR S
Sbjct: 264 TR-NGLLEVQKAFRDAGLD-FSKQGVAVTQENSLLDNTARIEGWLARFPMFDWVGGRTSE 321
Query: 278 CSAVGVLPLSLQYGFPIVQKFLEGAASIDKHFRSSSFEKNIPVLLGLLSVWNVSFLGYPA 337
SAVG+LP +LQ G I ++ L GAA +D+ R++ ++N LL L W +G
Sbjct: 322 MSAVGLLPAALQ-GIDI-KEMLVGAALMDEETRNTVVKENPAALLALCWYWASEGIGNKD 379
Query: 338 RAILPYSQALEKFAPHIQQLSMESNGKGVSIDGVQLSFETGEIDFGEPGTNGQHSFYQLI 397
+LPY +L + ++QQL MES GK +DG +++ G +G G+ QH++ Q +
Sbjct: 380 MVVLPYKDSLLLLSRYLQQLVMESLGKEFDLDGNRVN--QGLTVYGNKGSTDQHAYIQQL 437
Query: 398 HQG-RVIPCDFIGVVKSQQPVYLKGEIVSNHDELMSNFFAQPDALAYGKTPEQLHSEKVP 456
+G FI V++ + P HD + D L +G L +
Sbjct: 438 REGVHNFFVTFIEVLRDRPP---------GHDWELEPGVTCGDYL-FG----MLQGTR-- 481
Query: 457 EHLISHKTFQGNRXXXXXXXXXXXAYEIGQLLSIYEHRIAVQGFLWGINSFDQWGVELGK 516
+ +R +G L+++YE + + L IN++ Q GVE GK
Sbjct: 482 -----SALYSNDRESISVTVQEVTPRAVGALVALYERAVGIYASLVNINAYHQPGVEAGK 536
Query: 517 SLASQV 522
A +V
Sbjct: 537 KAAGEV 542
>Os08g0478800 Phosphoglucose isomerase (PGI) family protein
Length = 615
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/382 (29%), Positives = 178/382 (46%), Gaps = 46/382 (12%)
Query: 146 LTNVVSVGIGGSFLGPLFVHAALQTDPEAAESAKGRQLRFLANVDPVDVARSIKDLDPE- 204
T ++S+GIGGS LGP FV AL D +RF+ N DP + I L PE
Sbjct: 193 FTQILSIGIGGSSLGPQFVAEALAPDNPPL------MIRFIDNTDPAGIDHQIAQLGPEL 246
Query: 205 -TTLVVVVSKTFTTAETMLNARTLKEWIVSSLGPDAVAKHMIAVSTNLELVEKFG-IDPK 262
+TLV+V+SK+ T ET N + G + +K +A++ L++ I+
Sbjct: 247 ASTLVIVISKSGGTPETR-NGLLEVQKAFRDAGLE-FSKQGVAITQENSLLDNTARIEGW 304
Query: 263 NA-FAFWDWVGGRYSVCSAVGVLPLSLQYGFPIVQKFLEGAASIDKHFRSSSFEKNIPVL 321
A F +DWVGGR S SAVG+LP +LQ G I ++ L GAA +D+ R++ ++N L
Sbjct: 305 LARFPMFDWVGGRTSEMSAVGLLPAALQ-GIDI-KEMLVGAAQMDEETRNTEIKENPAAL 362
Query: 322 LGLLSVWNVSFLGYPARAILPYSQALEKFAPHIQQLSMESNGKGVSIDGVQLSFETGEID 381
L L W +G +L + ++QQL MES GK +DG +++ G
Sbjct: 363 LALCWYWASDGIGSKDSLLL--------LSRYLQQLVMESLGKEFDLDGNRVN--QGLTV 412
Query: 382 FGEPGTNGQHSFYQLIHQG-RVIPCDFIGVVKSQQPVYLKGEIVSNHDELMSNFFAQPDA 440
+G G+ QH++ Q + +G FI V++ + P H+ + D
Sbjct: 413 YGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPP---------GHEWELEPSVTCGDY 463
Query: 441 LAYGKTPEQLHSEKVPEHLISHKTFQGNRXXXXXXXXXXXAYEIGQLLSIYEHRIAVQGF 500
L +G LH + + +R +G L+++YE + + +
Sbjct: 464 L-FG----MLHGTR-------SALYANDRESITVTVQEVNPRAVGALVALYERAVGLYAY 511
Query: 501 LWGINSFDQWGVELGKSLASQV 522
L IN++ Q GVE GK A +V
Sbjct: 512 LININAYHQPGVEAGKKAAGEV 533
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,403,649
Number of extensions: 668968
Number of successful extensions: 1278
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1271
Number of HSP's successfully gapped: 5
Length of query: 567
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 461
Effective length of database: 11,501,117
Effective search space: 5302014937
Effective search space used: 5302014937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)