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Os08g0478800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphoglucose isomerase (PGI) family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0139) R2 : 0.696
β1 : -1.1 (0.051) R2dD : 0.32 R2D : 0.287
β2 : 0.892 (0.0363) R2dC : 0.405 R2C : 0.385
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.102 (0.0297) R2dN8 : 0.0105 R2N8 : -0.0155
σ : 0.262
deviance : 31.24
__
_____
C
peak time of C : 5.41
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.87 0.248 10.8 -1.09 0.858 0.182 0.502 0.186 -0.167 5.32 1005 379 -- --
28.04 0.247 10.8 -1.1 0.86 0.185 0.504 -- -0.173 5.33 1005 371 -- --
28.5 0.249 10.8 -1.09 0.859 0.185 -- 0.189 -0.169 5.33 1005 369 -- --
28.57 0.249 10.8 -1.09 0.854 0.192 -- -- -0.184 5.34 1006 390 -- --
64.07 0.373 10.9 -1.06 -- 0.309 -- 0.272 -0.21 -- 1006 215 -- --
30.46 0.259 10.8 -1.1 0.888 -- 0.56 -- -0.0991 5.4 -- -- -- --
31.24 0.262 10.8 -1.1 0.892 -- -- -- -0.102 5.41 -- -- -- --
64.48 0.374 10.9 -1.06 -- 0.316 -- -- -0.22 -- 1006 219 -- --
60.08 0.361 10.8 -- 0.841 0.194 -- -- -0.0628 5.38 1006 351 -- --
72.64 0.398 10.8 -1.07 -- -- -- -- -0.0797 -- -- -- -- --
62.89 0.371 10.8 -- 0.873 -- -- -- 0.0204 5.46 -- -- -- --
94.18 0.452 10.8 -- -- 0.32 -- -- -0.102 -- 1006 197 -- --
102.61 0.473 10.8 -- -- -- -- -- 0.0386 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.49 temperature 30 270 < th dose independent rect. 2 11
2 27.51 temperature 30 270 < th dose independent rect. 2 19
3 27.51 temperature 30 270 < th dose independent rect. 1 21
4 27.51 temperature 10 720 > th dose dependent rect. 5 4
6 27.55 temperature 10 270 > th dose dependent rect. 6 11
7 27.58 atmosphere 1005 720 > th dose independent rect. 18 11
15 27.65 atmosphere 1005 270 > th dose independent rect. 24 21
19 27.67 atmosphere 1005 270 > th dose independent rect. 15 18
22 27.69 temperature 25 720 > th dose independent rect. 6 3
39 27.73 wind 1 14400 < th dose dependent rect. 12 2
61 27.85 atmosphere 1005 720 > th dose independent sin 13 NA
96 27.96 atmosphere 1005 1440 < th dose independent rect. 18 1
103 27.98 wind 1 270 > th dose dependent rect. 22 18
107 28.00 wind 1 1440 > th dose independent rect. 23 1
113 28.00 wind 1 90 > th dose dependent rect. 1 16
117 28.01 atmosphere 1005 1440 > th dose independent rect. 18 1
122 28.01 temperature 25 270 > th dose dependent sin 3 NA
132 28.02 humidity 80 720 > th dose dependent rect. 21 2
142 28.04 temperature 25 270 > th dose dependent rect. 1 15
146 28.05 wind 1 14400 < th dose independent rect. 12 2
158 28.05 wind 7 90 < th dose dependent rect. 3 20
185 28.08 wind 1 14400 > th dose independent rect. 12 2
187 28.08 temperature 30 10 < th dose independent rect. 4 10
189 28.08 humidity 90 720 > th dose dependent rect. 20 4
194 28.09 wind 5 90 < th dose independent rect. 3 20
208 28.10 atmosphere 995 10 > th dose dependent rect. 4 19
209 28.10 temperature 25 90 > th dose dependent rect. 18 23
212 28.11 atmosphere 1005 720 > th dose independent rect. 10 19
217 28.12 temperature 20 720 > th dose independent rect. 6 11
240 28.14 temperature 25 270 > th dose dependent rect. 19 21
243 28.15 wind 5 4320 > th dose dependent rect. 15 1
260 28.17 humidity 90 720 < th dose dependent rect. 20 1
272 28.18 temperature 30 720 > th dose dependent rect. 18 1
279 28.18 temperature 25 720 > th dose dependent rect. 2 7
297 28.19 atmosphere 1005 720 < th dose independent rect. 15 16
307 28.20 atmosphere 1005 720 < th dose independent sin 13 NA
309 28.20 atmosphere 1005 720 < th dose independent rect. 15 14
323 28.21 humidity 70 270 > th dose independent rect. 14 7
325 28.21 temperature 30 270 < th dose independent rect. 9 12
346 28.22 atmosphere 995 270 > th dose dependent rect. 2 19
357 28.23 wind 3 270 > th dose independent rect. 23 17
384 28.25 wind 1 1440 < th dose independent rect. 23 1
385 28.25 atmosphere 1005 720 > th dose independent rect. 24 5
386 28.25 atmosphere 1005 720 < th dose independent rect. 18 10
409 28.26 atmosphere 1005 270 < th dose independent rect. 22 20
410 28.26 temperature 30 270 > th dose independent rect. 18 21
419 28.27 humidity 50 1440 < th dose independent rect. 16 1
434 28.27 humidity 50 1440 < th dose dependent rect. 16 1
464 28.29 temperature 30 270 < th dose independent sin 3 NA
466 28.29 atmosphere 1005 270 > th dose independent rect. 17 2
482 28.30 atmosphere 1005 270 < th dose independent rect. 23 8
490 28.30 atmosphere 1005 270 < th dose independent rect. 12 20
498 28.30 wind 5 90 < th dose dependent rect. 3 18
501 28.31 temperature 30 270 > th dose independent sin 3 NA
515 28.31 temperature 25 30 > th dose dependent rect. 7 13
521 28.31 atmosphere 995 270 > th dose dependent rect. 1 21
544 28.32 wind 9 270 < th dose dependent rect. 1 21
563 28.33 humidity 60 90 > th dose dependent rect. 3 20
566 28.34 atmosphere 1005 720 < th dose independent rect. 22 4
569 28.34 temperature 30 270 > th dose independent rect. 8 8
571 28.34 atmosphere 1005 270 > th dose independent rect. 1 9
583 28.34 wind 5 90 > th dose independent rect. 24 19
588 28.34 humidity 70 270 > th dose independent rect. 1 21
593 28.34 temperature 30 14400 > th dose dependent rect. 8 1
613 28.35 wind 5 4320 < th dose independent rect. 13 5
627 28.35 humidity 90 720 < th dose dependent rect. 18 4
634 28.35 temperature 25 90 > th dose dependent rect. 3 17
640 28.36 wind 5 4320 < th dose independent rect. 14 2
667 28.37 humidity 90 720 > th dose independent rect. 21 2
669 28.37 temperature 30 720 < th dose independent rect. 9 3
685 28.37 humidity 90 10 > th dose independent rect. 4 17
693 28.37 wind 5 90 < th dose independent rect. 3 22
707 28.38 wind 5 4320 > th dose independent rect. 14 2
709 28.38 wind 5 4320 > th dose independent rect. 14 4
725 28.38 temperature 30 270 < th dose independent rect. 15 23
728 28.38 wind 1 4320 < th dose dependent rect. 23 1
738 28.38 radiation 20 270 < th dose dependent rect. 15 18
872 28.43 atmosphere 1005 270 > th dose independent no NA NA
876 28.43 atmosphere 1005 270 > th dose independent rect. 15 5
890 28.43 temperature 30 10 < th dose independent rect. 4 21
900 28.43 radiation 10 4320 < th dose dependent rect. 10 1
921 28.43 humidity 70 10 > th dose dependent rect. 4 18
927 28.44 atmosphere 1005 720 > th dose independent rect. 2 2
949 28.44 wind 9 14400 < th dose dependent rect. 15 1
952 28.44 wind 9 4320 < th dose dependent rect. 13 3
991 28.45 humidity 90 90 > th dose independent rect. 3 20