BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0478800 Os08g0478800|AK107494
         (615 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24620.1  | chr4:12708972-12712610 REVERSE LENGTH=614          885   0.0  
AT5G42740.1  | chr5:17136080-17140622 FORWARD LENGTH=561           96   6e-20

>AT4G24620.1 | chr4:12708972-12712610 REVERSE LENGTH=614
          Length = 613

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/553 (76%), Positives = 465/553 (84%), Gaps = 10/553 (1%)

Query: 67  HADVLAHGAVDKDPIRLWNRYVEWLYQHKQLGLFVDVSRIGFTEEFLRRMEAPMGRAFAA 126
           HAD  +   + KDP  LW RY++W YQ K+LGL++D+SR+GFT+EF+  ME     AF A
Sbjct: 60  HAD--SKKELLKDPDALWKRYLDWFYQQKELGLYLDISRVGFTDEFVAEMEPRFQAAFKA 117

Query: 127 MRELEKGAIANPDEGRMVGHYWLRNPALAPNSFLRDKIETTLERILAFASDVISAKIRPP 186
           M +LEKG+IANPDEGRMVGHYWLRN  LAP   L+  IE TL+ I AF+ D+IS KI+PP
Sbjct: 118 MEDLEKGSIANPDEGRMVGHYWLRNSKLAPKPTLKTLIENTLDSICAFSDDIISGKIKPP 177

Query: 187 SSPAGRFTQXXXXXXXXXXXXPQFVAEALAPDNPPLMIRFIDNTDPAGIDHQIAQLGPEL 246
           SSP GRFTQ            PQFVAEALAPDNPPL IRFIDNTDPAGIDHQIAQLGPEL
Sbjct: 178 SSPEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPEL 237

Query: 247 ASTLVIVISKSGGTPETRNGLLEVQKAFRDAGLEFSKQGVAITQENSLLDNTARIEGWLA 306
           ASTLV+VISKSGGTPETRNGLLEVQKAFR+AGL F+KQGVAITQENSLLDNTARIEGWLA
Sbjct: 238 ASTLVVVISKSGGTPETRNGLLEVQKAFREAGLNFAKQGVAITQENSLLDNTARIEGWLA 297

Query: 307 RFPMFDWVGGRTSEMSAVGLLPAALQGIDIKEMLVGAAQMDEETRNTEIKENPAALLALC 366
           RFPM+DWVGGRTS MSAVGLLPAALQGI+++EML GAA MDE TR T IK NPAALLA+C
Sbjct: 298 RFPMYDWVGGRTSIMSAVGLLPAALQGINVREMLTGAALMDEATRTTSIKNNPAALLAMC 357

Query: 367 WYWASDGIGSKDXXXXXXXXX--------XXXVMESLGKEFDLDGNRVNQGLTVYGNKGS 418
           WYWAS+G+GSKD                    VMESLGKEFDLDGN VNQGLTVYGNKGS
Sbjct: 358 WYWASNGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDLDGNTVNQGLTVYGNKGS 417

Query: 419 TDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHEWELEPSVTCGDYLFGMLHGTRSALYAN 478
           TDQHAYIQQLR+GVHNFF TFIEVLRDRPPGH+WELEP VTCGDYLFGML GTRSALYAN
Sbjct: 418 TDQHAYIQQLRDGVHNFFATFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYAN 477

Query: 479 DRESITVTVQEVNPRAVGALVALYERAVGLYAYLININAYHQPGVEAGKKAAGEVLALQK 538
            RESI+VT+QEV P +VGA++ALYERAVGLYA ++NINAYHQPGVEAGKKAA EVLALQK
Sbjct: 478 GRESISVTIQEVTPTSVGAIIALYERAVGLYASIVNINAYHQPGVEAGKKAAAEVLALQK 537

Query: 539 RILLVLNEASCKDPAEPLTLDQIADRCHCPEEIEMIYKIIQHMAANDRALIAEGNCGSPR 598
           R+L VLNEA+CKDP EPLTL++IADRCH PEEIEMIYKII HM+ANDR LIAEGNCGSPR
Sbjct: 538 RVLSVLNEATCKDPVEPLTLEEIADRCHAPEEIEMIYKIIAHMSANDRVLIAEGNCGSPR 597

Query: 599 SIKVYLGECNVDD 611
           SIKVYLGECNVDD
Sbjct: 598 SIKVYLGECNVDD 610



>AT5G42740.1 | chr5:17136080-17140622 FORWARD LENGTH=561
          Length = 560

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 203/495 (41%), Gaps = 78/495 (15%)

Query: 98  GLFVDVSRIGFTEEFLRRME--APMGRAFAAMRELEKGAIANPDEGRMVGHYWLRNPA-- 153
           GL +D SR   T E + ++   A   +    +  +  G   N  E R V H  LR P   
Sbjct: 48  GLLLDYSRQRATVETMDKLLNLAKASQLTEKISRMFNGEHINSTENRSVLHVALRAPKDA 107

Query: 154 --LAPNSFLRDKIETTLERILAFASDVISAKIRPPS---SPAGRFTQXXXXXXXXXXXXP 208
              A    +  ++   L++I  F     S KIR  S   +                   P
Sbjct: 108 VIKADGMNVVPEVWNVLDKIKEF-----SDKIRSGSWVGATGKPLKDVIAIGIGGSFLGP 162

Query: 209 QFVAEALAPDNPPL------MIRFIDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPE 262
            FV  AL  D   L       +RF+ N DP  +   I+ L PE  +TLV+V+SK+  T E
Sbjct: 163 LFVHTALQTDPEALESAKGRQLRFLANIDPVDVARNISGLNPE--TTLVVVVSKTFTTAE 220

Query: 263 TRNGLLEVQKAFRDA--GLEFSKQGVAITQENSLLD------NTARIEGWLARFPMFDWV 314
           T      +++    A      +K  VA++   +L++      N A        F  +DWV
Sbjct: 221 TMLNARTLREWITAALGASAVAKHMVAVSTNLALVEKFGIDPNNA--------FAFWDWV 272

Query: 315 GGRTSEMSAVGLLPAALQ-GID-IKEMLVGAAQMDEETRNTEIKENPAALLALCWYWASD 372
           GGR S  SAVG+LP +LQ G   +++ L GA+ +D+  ++T  ++N   LL L   W   
Sbjct: 273 GGRYSVCSAVGVLPLSLQYGFSMVEKFLKGASSIDQHFQSTPFEKNIPVLLGLLSVWNVS 332

Query: 373 GIG--------SKDXXXXXXXXXXXXVMESLGKEFDLDGNRV--NQGLTVYGNKGSTDQH 422
            +G                        MES GK   +DG  +    G   +G  G+  QH
Sbjct: 333 FLGYPARAILPYSQALEKFAPHIQQVSMESNGKGVSIDGLPLPFETGEIDFGEPGTNGQH 392

Query: 423 AYIQQLREGVHNFFVTFIEVLRDRPPGHEWELEPSVTCG-DYLFGMLHGTRSAL------ 475
           ++ Q + +G       FI +++ + P +   L+  V    D L         AL      
Sbjct: 393 SFYQLIHQG-RVIPCDFIGIVKSQQPVY---LKGEVVSNHDELMSNFFAQPDALAYGKTP 448

Query: 476 -----------------YANDRESITVTVQEVNPRAVGALVALYERAVGLYAYLININAY 518
                            ++ +R S+++ + E+    VG L+A+YE  V +  ++  IN++
Sbjct: 449 EQLQKENVSENLIPHKTFSGNRPSLSLLLPELTAYNVGQLLAIYEHRVAVQGFVWGINSF 508

Query: 519 HQPGVEAGKKAAGEV 533
            Q GVE GK  A +V
Sbjct: 509 DQWGVELGKVLATQV 523



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,810,136
Number of extensions: 454766
Number of successful extensions: 884
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 2
Length of query: 615
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 511
Effective length of database: 8,255,305
Effective search space: 4218460855
Effective search space used: 4218460855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)