FiT-DB / Search/ Help/ Sample detail

Os06g0256500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glucose-6-phosphate isomerase, cytosolic B (EC 5.3.1.9) (GPI-B) (Phosphoglucose isomerase B) (PGI-B) (Phosphohexose isomerase B) (PHI- B).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0408) R2 : 0.656
β1 : -3.55 (0.149) R2dD : 0.447 R2D : 0.209
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.26 (0.153) R2dE : 0.176 R2E : -0.0269
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.67 (0.0891) R2dN8 : 0.373 R2N8 : 0.0505
σ : 0.759
deviance : 265.48
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 74
memory length : 2768
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
259.62 0.757 10.2 -3.39 0.359 -1.79 -0.0593 -2 -1.54 3.15 70.32 2860 -- --
261.96 0.754 10.2 -3.58 0.373 -2.03 -0.243 -- -1.58 3.73 73.2 2819 -- --
259.63 0.75 10.2 -3.39 0.358 -1.78 -- -2 -1.54 3.13 70.29 2860 -- --
260.87 0.752 10.3 -3.58 0.306 -2.13 -- -- -1.63 2.96 74 2819 -- --
261.52 0.753 10.2 -3.36 -- -1.92 -- -1.94 -1.56 -- 71.72 2731 -- --
379.99 0.914 10.2 -3.4 0.477 -- 0.375 -- -1.36 2.82 -- -- -- --
380.46 0.913 10.2 -3.4 0.48 -- -- -- -1.37 2.92 -- -- -- --
265.48 0.759 10.3 -3.55 -- -2.26 -- -- -1.67 -- 74 2768 -- --
378.28 0.906 10.2 -- 0.313 -3.75 -- -- -1.05 2.1 65 28315 -- --
393.74 0.927 10.2 -3.38 -- -- -- -- -1.35 -- -- -- -- --
685.97 1.23 10.1 -- 0.413 -- -- -- -0.987 2.87 -- -- -- --
377.37 0.905 10.1 -- -- -3.96 -- -- -1.01 -- 64.08 27010 -- --
695.84 1.23 10.1 -- -- -- -- -- -0.978 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 258.93 humidity 60 14400 > th dose independent rect. 12 1
2 259.72 humidity 70 14400 > th dose independent rect. 17 3
4 260.28 humidity 70 14400 > th dose independent rect. 17 8
6 260.29 wind 9 43200 < th dose dependent rect. 5 1
15 260.52 humidity 60 14400 < th dose independent rect. 12 1
19 260.93 wind 1 43200 > th dose dependent rect. 5 1
21 261.58 humidity 70 14400 < th dose independent rect. 17 3
22 261.77 wind 5 43200 < th dose dependent rect. 4 3
25 261.99 humidity 90 14400 < th dose dependent rect. 16 1
41 262.45 humidity 70 14400 < th dose independent rect. 16 16
53 262.59 humidity 50 14400 > th dose dependent rect. 16 1
64 263.05 wind 1 43200 > th dose dependent rect. 4 4
66 263.11 humidity 70 14400 < th dose dependent rect. 16 4
68 263.15 humidity 70 1440 > th dose independent rect. 15 23
91 263.50 humidity 60 1440 > th dose dependent sin 2 NA
118 263.90 humidity 50 14400 > th dose dependent rect. 14 5
127 264.01 humidity 60 1440 > th dose dependent rect. 6 8
128 264.01 humidity 50 14400 > th dose dependent rect. 12 8
132 264.09 humidity 70 14400 < th dose independent sin 12 NA
135 264.15 wind 3 43200 > th dose independent rect. 5 1
136 264.17 humidity 70 1440 > th dose independent rect. 9 16
138 264.19 humidity 70 1440 > th dose independent rect. 9 11
140 264.19 humidity 70 1440 > th dose independent rect. 9 22
182 264.48 humidity 80 14400 < th dose dependent rect. 11 9
187 264.52 wind 3 43200 < th dose independent rect. 5 1
193 264.59 humidity 70 1440 > th dose independent rect. 6 19
194 264.60 humidity 70 1440 > th dose independent rect. 23 21
200 264.62 humidity 70 1440 > th dose independent rect. 6 14
236 264.66 humidity 70 1440 > th dose independent no NA NA
281 264.88 humidity 70 14400 > th dose independent sin 12 NA
304 264.99 humidity 70 14400 < th dose independent rect. 16 21
314 265.07 humidity 70 14400 > th dose independent rect. 16 21
317 265.09 humidity 70 1440 > th dose independent rect. 11 23
328 265.15 humidity 60 1440 > th dose dependent rect. 5 15
332 265.20 wind 5 43200 < th dose dependent rect. 1 7
339 265.26 humidity 70 1440 > th dose independent sin 22 NA
353 265.36 humidity 80 14400 < th dose dependent sin 18 NA
407 265.66 humidity 60 14400 > th dose independent rect. 12 8
414 265.69 humidity 60 14400 > th dose independent rect. 12 13
494 266.07 humidity 60 1440 > th dose dependent rect. 11 1
506 266.19 humidity 60 1440 > th dose dependent rect. 10 3
564 266.54 humidity 60 1440 > th dose dependent rect. 6 19
628 266.80 wind 1 43200 < th dose dependent rect. 5 1
635 266.82 wind 3 43200 < th dose independent rect. 4 4
653 266.88 humidity 50 14400 > th dose dependent sin 20 NA
655 266.90 humidity 70 14400 < th dose dependent sin 13 NA
657 266.92 wind 3 43200 > th dose independent rect. 5 3
680 267.04 humidity 80 1440 < th dose independent rect. 7 8
686 267.07 humidity 50 1440 > th dose dependent rect. 16 22
696 267.12 wind 3 43200 > th dose independent rect. 7 1
774 267.50 humidity 60 14400 < th dose independent rect. 12 8
823 267.61 humidity 50 1440 > th dose dependent rect. 18 23
843 267.72 humidity 70 14400 > th dose independent rect. 9 11
849 267.74 humidity 70 1440 < th dose independent rect. 9 10
856 267.76 humidity 70 1440 < th dose independent rect. 9 22
859 267.78 humidity 70 14400 > th dose independent rect. 11 23
928 267.97 humidity 70 14400 > th dose independent rect. 9 15
953 268.03 wind 3 43200 < th dose independent rect. 7 1
954 268.03 humidity 70 14400 > th dose independent rect. 9 23
971 268.10 humidity 50 1440 > th dose dependent rect. 13 23
982 268.14 humidity 70 14400 > th dose independent rect. 23 21
999 268.18 humidity 50 1440 > th dose dependent no NA NA