BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0241200 Os06g0241200|AK100783
         (79 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0241200  Hypothetical protein                                161   1e-40
Os06g0130100  Similar to ERECTA-like kinase 1                      91   2e-19
Os06g0203800  Similar to ERECTA-like kinase 1                      70   4e-13

>Os06g0241200 Hypothetical protein
          Length = 79

 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  VCRNLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQG 60
          VCRNLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQG
Sbjct: 1  VCRNLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQG 60

Query: 61 INSMDQFLLLLVIWSTFLN 79
          INSMDQFLLLLVIWSTFLN
Sbjct: 61 INSMDQFLLLLVIWSTFLN 79



>Os06g0130100 Similar to ERECTA-like kinase 1
          Length = 999

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 48/57 (84%)

Query: 4   NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQG 60
           NLA+NN QGPIPANISSCTALNKFNVYGN+LNGSIPAGFQKLESL  L      F+G
Sbjct: 368 NLANNNLQGPIPANISSCTALNKFNVYGNKLNGSIPAGFQKLESLTYLNLSSNNFKG 424



>Os06g0203800 Similar to ERECTA-like kinase 1
          Length = 978

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 36/48 (75%)

Query: 4   NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLL 51
           NLA+NNF+GPIP NISSC  LN FN YGN LNG+IP    KLES+  L
Sbjct: 358 NLANNNFEGPIPDNISSCVNLNSFNAYGNRLNGTIPPSLHKLESMTYL 405



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,587,201
Number of extensions: 87123
Number of successful extensions: 4314
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4314
Number of HSP's successfully gapped: 3
Length of query: 79
Length of database: 17,035,801
Length adjustment: 50
Effective length of query: 29
Effective length of database: 14,425,101
Effective search space: 418327929
Effective search space used: 418327929
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)