Os06g0130100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ERECTA-like kinase 1.
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Os06g0130100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ERECTA-like kinase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 277.27 | 0.782 | 4.69 | -3.35 | 0.698 | 1.87 | -1.66 | -1.77 | -0.238 | 19.5 | 27.17 | 1205 | -- | -- |
| 277.7 | 0.776 | 4.66 | -2.98 | 0.687 | 1.71 | -1.73 | -- | -0.2 | 19.5 | 26.81 | 1188 | -- | -- |
| 284.74 | 0.786 | 4.7 | -3.34 | 0.702 | 1.87 | -- | -1.83 | -0.271 | 19.7 | 26.87 | 1204 | -- | -- |
| 285.4 | 0.787 | 4.64 | -2.92 | 0.726 | 1.63 | -- | -- | -0.153 | 19.9 | 27.37 | 1234 | -- | -- |
| 294.99 | 0.8 | 4.74 | -3.5 | -- | 2.37 | -- | -2.48 | -0.52 | -- | 24.85 | 959 | -- | -- |
| 394.14 | 0.931 | 4.66 | -2.47 | 0.825 | -- | -1.17 | -- | -0.185 | 20.7 | -- | -- | -- | -- |
| 398.13 | 0.934 | 4.66 | -2.44 | 0.825 | -- | -- | -- | -0.188 | 21.2 | -- | -- | -- | -- |
| 299.04 | 0.805 | 4.68 | -2.99 | -- | 2.13 | -- | -- | -0.376 | -- | 25.05 | 967 | -- | -- |
| 494.29 | 1.04 | 4.54 | -- | 0.752 | 1.17 | -- | -- | 0.325 | 19.8 | 30.6 | 1254 | -- | -- |
| 437.54 | 0.977 | 4.63 | -2.43 | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
| 554.61 | 1.1 | 4.59 | -- | 0.827 | -- | -- | -- | 0.0837 | 21 | -- | -- | -- | -- |
| 520.85 | 1.06 | 4.56 | -- | -- | 1.42 | -- | -- | 0.193 | -- | 27.88 | 991 | -- | -- |
| 593.8 | 1.14 | 4.57 | -- | -- | -- | -- | -- | 0.0783 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 273.03 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 4 | 277.25 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 13 | 282.47 | temperature | 30 | 1440 | > th | dose independent | sin | 15 | NA |
| 15 | 282.56 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 45 | 282.94 | temperature | 30 | 1440 | < th | dose independent | sin | 15 | NA |
| 47 | 283.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 55 | 283.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 56 | 283.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 59 | 283.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 64 | 283.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 82 | 283.47 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 98 | 283.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 21 |
| 129 | 283.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 131 | 283.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 133 | 283.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 134 | 283.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 137 | 283.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 141 | 283.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 171 | 284.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 173 | 284.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 175 | 284.22 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 186 | 284.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 192 | 284.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 193 | 284.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 196 | 284.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 201 | 284.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 253 | 284.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 259 | 284.65 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 262 | 284.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 264 | 284.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 267 | 284.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 273 | 284.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 280 | 284.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 285 | 284.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 18 |
| 288 | 284.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 21 |
| 292 | 284.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 303 | 284.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 304 | 284.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 319 | 284.92 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 320 | 284.93 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 341 | 284.94 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 382 | 285.08 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 494 | 285.15 | temperature | 30 | 1440 | > th | dose dependent | sin | 17 | NA |
| 598 | 285.78 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |