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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0241200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.24 (0.0331) R2 : 0.469
β1 : 2.06 (0.121) R2dD : 0.353 R2D : 0.317
β2 : 0.874 (0.0846) R2dC : 0.125 R2C : 0.124
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.26 (0.0705) R2dN8 : 0.0212 R2N8 : -0.0119
σ : 0.621
deviance : 175.69
__
_____
C
peak time of C : 7.67
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.25 0.582 4.12 2.58 0.876 -0.0944 1.39 -3.31 0.446 7.74 20.1 4727 -- --
156.68 0.583 4.21 2.51 0.829 0.848 0.901 -- 0.4 7.81 14.63 11453 -- --
158.48 0.586 4.12 2.64 0.886 -0.0512 -- -3.19 0.447 7.63 20.2 4472 -- --
159.54 0.588 4.21 2.65 0.89 1.17 -- -- 0.413 7.64 14.2 10202 -- --
200.16 0.659 4.15 2.59 -- -0.135 -- -3.45 0.448 -- 19.62 4744 -- --
169.82 0.611 4.24 2.03 0.872 -- 1.43 -- 0.262 7.75 -- -- -- --
175.69 0.621 4.24 2.06 0.874 -- -- -- 0.26 7.67 -- -- -- --
201.72 0.661 4.23 2.65 -- 1.15 -- -- 0.425 -- 14.58 10438 -- --
290.79 0.794 4.32 -- 0.947 0.775 -- -- -0.00268 7.33 12.9 5232 -- --
216.85 0.688 4.26 2.08 -- -- -- -- 0.272 -- -- -- -- --
288 0.794 4.29 -- 0.892 -- -- -- 0.0297 7.51 -- -- -- --
268.73 0.763 4.41 -- -- -1.33 -- -- -0.355 -- 66.3 33149 -- --
330.53 0.849 4.32 -- -- -- -- -- 0.0421 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 137.07 temperature 20.0 90 > th dose independent rect. 9 20
20 142.30 temperature 20.0 90 > th dose independent rect. 24 14
32 143.51 temperature 10.0 90 > th dose dependent rect. 9 20
34 143.58 temperature 20.0 270 > th dose independent rect. 22 15
86 146.71 wind 7.0 90 < th dose independent rect. 9 20
97 147.18 temperature 15.0 720 > th dose independent rect. 1 18
100 147.28 humidity 50.0 90 > th dose independent rect. 9 20
103 147.32 temperature 10.0 270 > th dose dependent rect. 17 10
104 147.34 atmosphere 1010.0 90 < th dose independent rect. 9 20
124 147.99 radiation 1.0 270 < th dose independent rect. 4 7
129 148.08 wind 9.0 270 < th dose independent rect. 7 21
130 148.09 temperature 10.0 270 > th dose dependent rect. 22 14
136 148.16 radiation 10.0 270 < th dose independent rect. 4 3
147 148.29 temperature 15.0 4320 > th dose independent rect. 7 3
155 148.58 atmosphere 1015.0 720 < th dose independent rect. 24 4
163 148.69 atmosphere 1010.0 90 < th dose independent rect. 5 4
166 148.72 temperature 15.0 720 > th dose independent rect. 19 14
169 148.73 radiation 30.0 270 < th dose dependent rect. 4 4
170 148.74 precipitation 0.1 270 < th dose independent rect. 7 21
171 148.74 precipitation 0.1 270 < th dose dependent rect. 7 21
176 148.78 temperature 15.0 720 > th dose independent rect. 3 14
177 148.80 temperature 15.0 720 > th dose independent rect. 21 10
181 148.83 wind 9.0 14400 < th dose independent rect. 7 3
184 148.86 humidity 60.0 90 > th dose independent rect. 5 4
185 148.86 radiation 30.0 90 < th dose independent rect. 5 4
188 148.92 temperature 30.0 90 < th dose independent rect. 5 4
193 148.98 precipitation 0.1 90 < th dose independent rect. 5 4
194 148.98 precipitation 0.1 90 < th dose dependent rect. 5 4
195 148.99 wind 9.0 90 < th dose independent rect. 5 4
196 148.99 temperature 10.0 90 > th dose independent rect. 5 4
199 148.99 atmosphere 995.0 90 > th dose independent rect. 5 4
208 149.02 temperature 10.0 270 > th dose dependent rect. 4 3
211 149.04 atmosphere 1015.0 720 < th dose independent rect. 1 2
230 149.16 precipitation 0.1 90 < th dose independent rect. 9 20
231 149.16 precipitation 0.1 90 < th dose dependent rect. 9 20
232 149.22 temperature 15.0 720 > th dose independent rect. 1 2
236 149.29 temperature 20.0 90 > th dose independent rect. 1 3
242 149.36 temperature 15.0 720 > th dose independent rect. 1 10
243 149.36 temperature 20.0 720 > th dose independent rect. 9 10
246 149.40 wind 1.0 90 > th dose independent rect. 5 4
266 149.67 atmosphere 1015.0 720 < th dose independent rect. 1 18
272 149.74 humidity 50.0 14400 > th dose independent rect. 7 2
275 149.76 temperature 15.0 720 > th dose independent rect. 24 4
280 149.80 humidity 80.0 270 > th dose dependent rect. 4 8
295 149.92 wind 7.0 270 < th dose independent rect. 23 13
297 149.92 humidity 50.0 270 > th dose dependent rect. 4 3
300 149.94 temperature 15.0 720 > th dose independent rect. 15 22
303 149.97 radiation 1.0 270 < th dose dependent rect. 4 7
307 150.05 humidity 60.0 90 > th dose dependent rect. 5 6
308 150.06 temperature 15.0 720 > th dose independent rect. 15 14
311 150.10 temperature 10.0 43200 > th dose independent rect. 10 4
313 150.10 wind 9.0 90 < th dose dependent rect. 5 4
322 150.18 temperature 10.0 43200 > th dose independent rect. 10 7
324 150.18 temperature 15.0 720 > th dose independent rect. 16 20
338 150.25 wind 9.0 270 < th dose independent rect. 6 23
341 150.26 wind 1.0 270 > th dose independent rect. 3 5
355 150.37 temperature 20.0 90 > th dose independent rect. 17 23
359 150.40 temperature 15.0 720 > th dose independent rect. 5 10
365 150.44 temperature 15.0 720 > th dose independent rect. 13 18
372 150.47 temperature 15.0 720 > th dose independent rect. 7 6
391 150.63 atmosphere 995.0 90 > th dose independent rect. 9 20
402 150.71 atmosphere 1015.0 720 < th dose independent rect. 23 14
407 150.73 atmosphere 995.0 90 > th dose dependent rect. 5 4
411 150.76 temperature 15.0 720 > th dose independent rect. 19 22
413 150.77 wind 7.0 270 < th dose independent rect. 3 5
415 150.79 radiation 20.0 4320 < th dose independent rect. 2 4
417 150.79 radiation 10.0 270 < th dose dependent rect. 5 1
421 150.81 temperature 10.0 270 > th dose independent rect. 3 5
423 150.81 temperature 30.0 270 < th dose independent rect. 3 5
424 150.81 humidity 50.0 270 > th dose independent rect. 3 5
426 150.81 atmosphere 995.0 270 > th dose independent rect. 3 5
427 150.81 atmosphere 1015.0 270 < th dose independent rect. 3 5
433 150.83 precipitation 0.1 270 < th dose independent rect. 3 5
437 150.83 precipitation 0.1 270 < th dose dependent rect. 3 5
455 150.89 temperature 20.0 90 > th dose dependent rect. 1 3
459 150.90 humidity 50.0 270 > th dose dependent rect. 3 6
492 151.13 temperature 10.0 270 > th dose dependent rect. 5 1
522 151.21 atmosphere 1015.0 720 < th dose independent rect. 1 10
525 151.23 radiation 40.0 30 < th dose independent rect. 5 6
541 151.32 precipitation 0.1 270 < th dose independent rect. 6 23
543 151.32 precipitation 0.1 270 < th dose dependent rect. 6 23
565 151.43 temperature 15.0 270 > th dose dependent rect. 17 20
572 151.47 wind 9.0 14400 < th dose independent rect. 2 2
573 151.47 humidity 50.0 14400 > th dose independent rect. 5 4
580 151.49 precipitation 0.1 270 < th dose independent rect. 5 1
583 151.49 precipitation 0.1 270 < th dose dependent rect. 5 1
586 151.50 wind 7.0 270 < th dose independent rect. 5 1
588 151.50 temperature 10.0 270 > th dose independent rect. 5 1
590 151.50 temperature 30.0 270 < th dose independent rect. 5 1
591 151.50 humidity 50.0 270 > th dose independent rect. 5 1
594 151.50 atmosphere 995.0 270 > th dose independent rect. 5 1
595 151.50 atmosphere 1015.0 270 < th dose independent rect. 5 1
608 151.53 atmosphere 995.0 270 > th dose dependent rect. 3 5
611 151.55 humidity 80.0 270 > th dose independent rect. 3 9
628 151.65 radiation 1.0 90 > th dose independent rect. 4 5
663 151.79 temperature 20.0 30 > th dose independent rect. 20 23
671 151.83 temperature 15.0 720 > th dose independent rect. 17 10
679 151.86 temperature 15.0 720 > th dose independent rect. 7 14
683 151.87 radiation 1.0 10 > th dose independent rect. 16 17
716 151.93 temperature 15.0 90 > th dose dependent rect. 20 9
739 151.97 humidity 70.0 43200 < th dose dependent rect. 8 2
743 151.98 radiation 20.0 4320 < th dose independent rect. 21 9
755 152.01 temperature 20.0 30 > th dose independent rect. 20 9
792 152.10 radiation 1.0 270 < th dose independent rect. 4 14
801 152.13 humidity 60.0 43200 < th dose independent rect. 5 5
802 152.13 temperature 15.0 720 > th dose independent rect. 3 22
809 152.15 humidity 50.0 270 > th dose dependent rect. 5 1
815 152.18 precipitation 0.1 270 < th dose independent rect. 23 13
820 152.18 precipitation 0.1 270 < th dose dependent rect. 23 13
827 152.20 temperature 20.0 720 > th dose independent rect. 17 2
858 152.26 radiation 20.0 4320 < th dose independent rect. 18 12
866 152.29 humidity 60.0 43200 < th dose independent rect. 1 10
867 152.29 humidity 50.0 270 > th dose independent rect. 23 13
871 152.29 wind 9.0 270 < th dose dependent rect. 5 1
880 152.31 radiation 40.0 10 < th dose independent rect. 5 20
883 152.32 atmosphere 995.0 270 > th dose independent rect. 7 21
888 152.34 temperature 10.0 270 > th dose independent rect. 12 11
890 152.34 atmosphere 995.0 270 > th dose independent rect. 23 13
892 152.35 radiation 1.0 720 > th dose independent rect. 7 6
917 152.42 humidity 90.0 270 < th dose independent rect. 8 4
950 152.44 atmosphere 995.0 1440 > th dose independent rect. 7 3
952 152.44 atmosphere 1015.0 1440 < th dose independent rect. 7 3
953 152.44 humidity 90.0 270 > th dose independent rect. 4 16
955 152.44 temperature 10.0 1440 > th dose independent rect. 10 21
999 152.52 atmosphere 995.0 270 > th dose dependent rect. 5 1