BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0241200 Os06g0241200|AK100783
(79 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62230.1 | chr5:24996433-25002130 FORWARD LENGTH=967 65 7e-12
AT2G26330.1 | chr2:11208367-11213895 REVERSE LENGTH=977 63 3e-11
AT5G07180.1 | chr5:2227787-2233232 REVERSE LENGTH=968 60 3e-10
AT4G28650.1 | chr4:14144155-14147276 REVERSE LENGTH=1014 50 3e-07
AT4G20140.1 | chr4:10884220-10888045 FORWARD LENGTH=1250 48 8e-07
AT5G44700.1 | chr5:18033049-18036894 REVERSE LENGTH=1253 48 9e-07
AT2G42290.1 | chr2:17616992-17619472 REVERSE LENGTH=647 48 1e-06
AT5G10020.1 | chr5:3133514-3136949 FORWARD LENGTH=1049 48 1e-06
AT1G17750.1 | chr1:6106656-6110008 FORWARD LENGTH=1089 47 1e-06
AT5G24100.1 | chr5:8149216-8151191 FORWARD LENGTH=615 47 2e-06
AT1G73066.1 | chr1:27481785-27483581 FORWARD LENGTH=599 46 4e-06
AT1G09970.2 | chr1:3252408-3255428 FORWARD LENGTH=978 46 4e-06
AT1G73080.1 | chr1:27484513-27488021 FORWARD LENGTH=1124 46 5e-06
AT5G01890.1 | chr5:341661-344650 REVERSE LENGTH=968 45 8e-06
>AT5G62230.1 | chr5:24996433-25002130 FORWARD LENGTH=967
Length = 966
Score = 65.1 bits (157), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 40/57 (70%)
Query: 4 NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQG 60
NLA+N GPIP+NISSC ALN+FNV+GN L+GSIP F+ L SL L F+G
Sbjct: 364 NLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAFRNLGSLTYLNLSSNNFKG 420
>AT2G26330.1 | chr2:11208367-11213895 REVERSE LENGTH=977
Length = 976
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 38/48 (79%)
Query: 4 NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLL 51
N+A+N+ +GPIP ++SSCT LN NV+GN+ +G+IP FQKLES+ L
Sbjct: 361 NVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYL 408
>AT5G07180.1 | chr5:2227787-2233232 REVERSE LENGTH=968
Length = 967
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 4 NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQG 60
NLA+NN G IP+NISSC ALN+FNV+GN L+G++P F+ L SL L F+G
Sbjct: 366 NLANNNLVGLIPSNISSCAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSFKG 422
>AT4G28650.1 | chr4:14144155-14147276 REVERSE LENGTH=1014
Length = 1013
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%)
Query: 5 LADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQG 60
L +N F G IPA +S+C +L + + N LNGSIP GF KLE L LE + G
Sbjct: 387 LFNNTFTGQIPATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSG 442
>AT4G20140.1 | chr4:10884220-10888045 FORWARD LENGTH=1250
Length = 1249
Score = 48.1 bits (113), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 5 LADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLL 51
L DN +GPIPA + +C+ L F N LNG+IPA +LE+L++L
Sbjct: 198 LQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEIL 244
>AT5G44700.1 | chr5:18033049-18036894 REVERSE LENGTH=1253
Length = 1252
Score = 48.1 bits (113), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%)
Query: 5 LADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQG 60
L DN +GPIPA I +CT+L F N LNGS+PA +L++L L F G
Sbjct: 199 LQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSG 254
>AT2G42290.1 | chr2:17616992-17619472 REVERSE LENGTH=647
Length = 646
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 4 NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESL-DLLEHIFKQFQG 60
+L+ N+ GPIPA I S +LN + N LNGS+P +L SL L F QF G
Sbjct: 121 DLSHNSLSGPIPAQIKSMKSLNHLDFSSNHLNGSLPESLTELGSLVGTLNFSFNQFTG 178
>AT5G10020.1 | chr5:3133514-3136949 FORWARD LENGTH=1049
Length = 1048
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 4 NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGF---QKLESLDL 50
+L+DN F GPIP IS +LN N+ N+ G P+GF Q+L SLDL
Sbjct: 129 DLSDNGFYGPIPGRISELWSLNHLNLSSNKFEGGFPSGFRNLQQLRSLDL 178
>AT1G17750.1 | chr1:6106656-6110008 FORWARD LENGTH=1089
Length = 1088
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 4 NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQGINS 63
NL+ N +GP+P+ +S C L F+V N LNGSIP+ F+ +SL L F G +
Sbjct: 537 NLSHNYLEGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRSWKSLSTLVLSDNNFLG--A 594
Query: 64 MDQFL 68
+ QFL
Sbjct: 595 IPQFL 599
>AT5G24100.1 | chr5:8149216-8151191 FORWARD LENGTH=615
Length = 614
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 4 NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQG 60
+L +N F GP+P++ ++ T L ++Y N NGSIPAGF L L L F G
Sbjct: 127 SLGNNRFSGPLPSDYATWTNLTVLDLYSNRFNGSIPAGFANLTGLVSLNLAKNSFSG 183
>AT1G73066.1 | chr1:27481785-27483581 FORWARD LENGTH=599
Length = 598
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 4 NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQG--- 60
NL++N G IPA + +C++LN + N+L G IP+ KL L+ LE +F G
Sbjct: 319 NLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIP 378
Query: 61 -----INSMDQFLL 69
I S+ Q L+
Sbjct: 379 IEIWKIQSLTQLLV 392
>AT1G09970.2 | chr1:3252408-3255428 FORWARD LENGTH=978
Length = 977
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 1 VCRN-------LADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEH 53
+C+N L NN G IP + ++C L +F V N LNG++PAG L L++++
Sbjct: 358 MCKNGKMKALLLLQNNLTGSIPESYANCLTLQRFRVSENNLNGTVPAGLWGLPKLEIIDI 417
Query: 54 IFKQFQGINSMD 65
F+G + D
Sbjct: 418 EMNNFEGPITAD 429
>AT1G73080.1 | chr1:27484513-27488021 FORWARD LENGTH=1124
Length = 1123
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 4 NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQG 60
NL++N G IPA + +C++LN + N+L G IP+ KL L+ LE +F G
Sbjct: 321 NLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSG 377
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 4 NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLEHIFKQFQGINS 63
NL+ N +G +PA +S+C +L +F+V N LNGS+P+ F + L L +F G
Sbjct: 560 NLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLSENRFSG--G 617
Query: 64 MDQFLLLLVIWSTF 77
+ QFL L ST
Sbjct: 618 IPQFLPELKKLSTL 631
>AT5G01890.1 | chr5:341661-344650 REVERSE LENGTH=968
Length = 967
Score = 45.1 bits (105), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 4 NLADNNFQGPIPANISSCTALNKFNVYGNELNGSIPAGFQKLESLDLLE 52
+L N G IPA IS+C+ALN N+ NEL+G+IP L +L+ ++
Sbjct: 463 HLHRNRLSGQIPAKISNCSALNTINLSENELSGAIPGSIGSLSNLEYID 511
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.140 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,786,464
Number of extensions: 64201
Number of successful extensions: 2407
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 2421
Number of HSP's successfully gapped: 22
Length of query: 79
Length of database: 11,106,569
Length adjustment: 51
Effective length of query: 28
Effective length of database: 9,708,353
Effective search space: 271833884
Effective search space used: 271833884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)