FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0203800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ERECTA-like kinase 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0202) R2 : 0.00297
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0495 (0.0425) R2dN8 : 0.00383 R2N8 : 0.00297
σ : 0.38
deviance : 66.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.12 0.364 3.33 0.173 0.242 0.218 -0.0311 1.18 -0.0696 6.46 88.99 5900 -- --
61.83 0.366 3.33 0.123 0.255 0.268 -0.0601 -- -0.112 6.6 88 8087 -- --
60.12 0.361 3.33 0.174 0.243 0.219 -- 1.18 -0.0696 6.47 89 5911 -- --
61.84 0.366 3.33 0.122 0.255 0.27 -- -- -0.111 6.7 87.98 8134 -- --
63.1 0.37 3.33 0.181 -- 0.225 -- 1.17 -0.0674 -- 89 5740 -- --
62.96 0.372 3.32 0.0864 0.242 -- -0.0487 -- -0.0446 6.39 -- -- -- --
62.96 0.372 3.32 0.0858 0.242 -- -- -- -0.0444 6.42 -- -- -- --
64.91 0.375 3.33 0.126 -- 0.284 -- -- -0.0954 -- 91 7062 -- --
62.22 0.367 3.33 -- 0.258 0.242 -- -- -0.114 6.65 88 8104 -- --
66 0.38 3.32 0.092 -- -- -- -- -0.0393 -- -- -- -- --
63.16 0.372 3.32 -- 0.243 -- -- -- -0.0539 6.4 -- -- -- --
65.3 0.376 3.34 -- -- 0.261 -- -- -0.103 -- 88.79 7059 -- --
66.23 0.38 3.32 -- -- -- -- -- -0.0495 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.07 humidity 80.0 10 < th dose independent rect. 6 2
3 56.12 radiation 10.0 30 > th dose independent rect. 7 1
6 56.45 humidity 80.0 10 < th dose independent rect. 23 9
28 57.33 radiation 10.0 10 > th dose independent rect. 16 16
53 58.46 temperature 25.0 30 > th dose independent rect. 7 1
55 59.12 atmosphere 1005.0 10 > th dose dependent rect. 2 2
61 59.34 atmosphere 995.0 30 > th dose independent rect. 3 23
62 59.34 humidity 90.0 10 < th dose dependent rect. 7 1
70 59.49 humidity 90.0 90 < th dose dependent rect. 2 6
73 59.58 atmosphere 995.0 10 > th dose independent rect. 8 23
77 59.60 atmosphere 1005.0 30 > th dose independent rect. 7 1
79 59.64 wind 1.0 10 > th dose independent rect. 8 23
86 59.72 atmosphere 995.0 720 > th dose independent rect. 23 16
87 59.77 humidity 70.0 4320 > th dose independent rect. 10 1
92 59.86 wind 1.0 14400 < th dose independent rect. 4 3
93 59.88 humidity 70.0 4320 < th dose independent rect. 10 1
95 59.89 wind 1.0 14400 > th dose independent rect. 4 3
97 59.90 temperature 25.0 90 > th dose dependent rect. 1 1
101 59.97 humidity 70.0 14400 < th dose independent rect. 8 2
104 59.98 humidity 70.0 14400 > th dose independent rect. 8 2
127 59.99 temperature 25.0 90 > th dose independent rect. 1 1
130 59.99 wind 5.0 10 < th dose dependent rect. 7 1
134 60.02 radiation 1.0 10 > th dose dependent rect. 7 1
138 60.04 temperature 20.0 10 > th dose dependent rect. 7 1
141 60.05 humidity 80.0 14400 < th dose dependent rect. 2 8
142 60.06 wind 5.0 30 < th dose independent rect. 7 1
167 60.11 atmosphere 1000.0 30 > th dose independent rect. 8 18
168 60.11 radiation 1.0 43200 < th dose dependent rect. 3 1
169 60.11 humidity 80.0 14400 < th dose dependent rect. 7 3
184 60.13 humidity 80.0 14400 < th dose dependent rect. 8 1
185 60.13 wind 1.0 14400 < th dose dependent rect. 4 3
188 60.14 radiation 1.0 4320 < th dose dependent rect. 3 1
193 60.16 humidity 90.0 90 < th dose independent rect. 2 2
210 60.17 wind 1.0 30 > th dose independent rect. 7 1
226 60.17 humidity 70.0 4320 < th dose dependent rect. 12 1
230 60.18 atmosphere 1005.0 90 > th dose independent rect. 2 1
235 60.18 humidity 70.0 4320 > th dose independent rect. 19 18
240 60.19 wind 9.0 1440 < th dose independent rect. 3 1
241 60.19 temperature 10.0 1440 > th dose independent rect. 3 1
244 60.19 temperature 30.0 1440 < th dose independent rect. 3 1
248 60.19 humidity 50.0 1440 > th dose independent rect. 3 1
257 60.19 atmosphere 995.0 1440 > th dose independent rect. 3 1
258 60.19 radiation 1.0 1440 < th dose independent rect. 3 1
280 60.19 temperature 10.0 1440 > th dose independent rect. 4 23
322 60.21 humidity 50.0 14400 > th dose dependent rect. 8 1
358 60.25 humidity 70.0 4320 > th dose independent sin 4 NA
406 60.27 wind 3.0 30 < th dose independent rect. 2 1
430 60.27 humidity 80.0 14400 < th dose dependent sin 7 NA
442 60.28 wind 3.0 30 < th dose dependent rect. 2 1
472 60.29 humidity 60.0 14400 < th dose dependent rect. 12 5
475 60.30 humidity 70.0 4320 < th dose independent sin 3 NA
480 60.30 temperature 10.0 30 > th dose independent rect. 2 1
482 60.30 temperature 30.0 30 < th dose independent rect. 2 1
483 60.30 humidity 50.0 30 > th dose independent rect. 2 1
486 60.30 humidity 90.0 30 > th dose independent rect. 2 1
488 60.30 atmosphere 1010.0 30 < th dose independent rect. 2 1
490 60.30 radiation 1.0 30 < th dose independent rect. 2 1
495 60.30 precipitation 0.1 30 < th dose independent rect. 2 1
500 60.30 temperature 10.0 30 > th dose independent rect. 3 23
502 60.30 humidity 50.0 30 > th dose dependent rect. 2 1
506 60.30 radiation 1.0 30 < th dose dependent rect. 2 1
511 60.30 precipitation 0.1 30 < th dose dependent rect. 2 1
550 60.31 wind 9.0 10 < th dose independent rect. 8 23
579 60.32 atmosphere 995.0 30 > th dose dependent rect. 7 1
634 60.34 wind 1.0 14400 < th dose independent rect. 4 7
651 60.34 humidity 70.0 4320 > th dose independent rect. 14 22
710 60.35 atmosphere 1015.0 30 < th dose dependent rect. 2 1
720 60.36 wind 1.0 30 > th dose independent rect. 2 1
728 60.36 wind 1.0 14400 > th dose independent rect. 4 7
808 60.37 humidity 60.0 14400 < th dose dependent sin 17 NA
830 60.38 temperature 30.0 4320 < th dose independent rect. 3 6
844 60.38 temperature 30.0 30 < th dose dependent rect. 2 1
847 60.38 humidity 50.0 4320 > th dose dependent rect. 11 2
885 60.39 wind 9.0 1440 < th dose independent rect. 8 1
888 60.39 temperature 10.0 1440 > th dose independent rect. 8 1
893 60.39 humidity 50.0 1440 > th dose independent rect. 8 1
895 60.39 atmosphere 995.0 1440 > th dose independent rect. 8 1
898 60.39 atmosphere 1015.0 1440 < th dose independent rect. 8 1
899 60.39 precipitation 0.1 30 < th dose independent rect. 7 1
929 60.39 temperature 10.0 1440 > th dose independent rect. 9 23
940 60.39 precipitation 0.1 30 < th dose dependent rect. 7 1
951 60.40 humidity 70.0 4320 > th dose independent no NA NA
954 60.40 temperature 10.0 30 > th dose independent rect. 7 1
956 60.40 temperature 30.0 30 < th dose independent rect. 7 1
957 60.40 humidity 50.0 30 > th dose independent rect. 7 1
959 60.40 atmosphere 995.0 30 > th dose independent rect. 7 1
960 60.40 atmosphere 1015.0 30 < th dose independent rect. 7 1