BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0239100 Os06g0239100|011-028-D11
(371 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0239100 Peptidase M10A and M12B, matrixin and adamalys... 627 e-180
Os02g0740700 Peptidase M10A and M12B, matrixin and adamalys... 430 e-121
Os10g0557900 Peptidase M10A and M12B, matrixin and adamalys... 246 3e-65
Os10g0558150 152 3e-37
Os10g0558100 136 3e-32
>Os06g0239100 Peptidase M10A and M12B, matrixin and adamalysin family protein
Length = 371
Score = 627 bits (1616), Expect = e-180, Method: Compositional matrix adjust.
Identities = 314/354 (88%), Positives = 314/354 (88%)
Query: 1 MATTTSPXXXXXXXXXXXXXXXXXQPAFALPAGLPDIKSLTNPWSAFKNLSGCHFGDERQ 60
MATTTSP QPAFALPAGLPDIKSLTNPWSAFKNLSGCHFGDERQ
Sbjct: 1 MATTTSPLVVVLLAVVAAIAVSLVQPAFALPAGLPDIKSLTNPWSAFKNLSGCHFGDERQ 60
Query: 61 GLGKLKDYLWHFGXXXXXXXXXXXXXFNDLFDADMELAIKMYQGNFGLDVTGDLDAATVS 120
GLGKLKDYLWHFG FNDLFDADMELAIKMYQGNFGLDVTGDLDAATVS
Sbjct: 61 GLGKLKDYLWHFGYLSYPSSSSLSPSFNDLFDADMELAIKMYQGNFGLDVTGDLDAATVS 120
Query: 121 QMMAPRCGVADVVNGTSTMXXXXXXXXXXLYSYFPGSPRWPRSRTTLRYAITATSQTSID 180
QMMAPRCGVADVVNGTSTM LYSYFPGSPRWPRSRTTLRYAITATSQTSID
Sbjct: 121 QMMAPRCGVADVVNGTSTMGGGGGVRGRGLYSYFPGSPRWPRSRTTLRYAITATSQTSID 180
Query: 181 RATLSKVFASAFARWSAATTLNFTEAASAADADITIGFYGGDHGDGEAFDGPLGTLAHAF 240
RATLSKVFASAFARWSAATTLNFTEAASAADADITIGFYGGDHGDGEAFDGPLGTLAHAF
Sbjct: 181 RATLSKVFASAFARWSAATTLNFTEAASAADADITIGFYGGDHGDGEAFDGPLGTLAHAF 240
Query: 241 SPTNGRLHLDASEAWVAGGDVTRASSNAAVDLESVAVHEIGHILGLGHSSAADSIMFPTL 300
SPTNGRLHLDASEAWVAGGDVTRASSNAAVDLESVAVHEIGHILGLGHSSAADSIMFPTL
Sbjct: 241 SPTNGRLHLDASEAWVAGGDVTRASSNAAVDLESVAVHEIGHILGLGHSSAADSIMFPTL 300
Query: 301 TSRTKKVNLATDDVAGIQGLYGNNPNFKGVTPPATSSREMDSAGAGELSRPWRR 354
TSRTKKVNLATDDVAGIQGLYGNNPNFKGVTPPATSSREMDSAGAGELSRPWRR
Sbjct: 301 TSRTKKVNLATDDVAGIQGLYGNNPNFKGVTPPATSSREMDSAGAGELSRPWRR 354
>Os02g0740700 Peptidase M10A and M12B, matrixin and adamalysin family protein
Length = 372
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/334 (66%), Positives = 251/334 (75%), Gaps = 10/334 (2%)
Query: 26 PAFALPAGLPDIKS-LTNPWSAFKNLSGCHFGDERQGLGKLKDYLWHFGXXXXXXXXXXX 84
PA A P GLP + NPWSAF+NLSGCH G+ER+GLG+LKDYL HFG
Sbjct: 25 PAMAFPMGLPATANPFPNPWSAFQNLSGCHAGEEREGLGRLKDYLSHFGYLPPPPSSSP- 83
Query: 85 XXFNDLFDADMELAIKMYQGNFGLDVTGDLDAATVSQMMAPRCGVADVVNGTSTMXXXXX 144
++D FD +E AI YQ NFGL+ TG+LD TV QM+APRCGVADV+NGTSTM
Sbjct: 84 --YSDAFDDSLEAAIAAYQRNFGLNATGELDTDTVDQMVAPRCGVADVINGTSTMDRNSS 141
Query: 145 XXX---XXLYSYFPGSPRWPRSRTTLRYAITATSQTSIDRATLSKVFASAFARWSAATTL 201
LYSYFPG P WP R LRYAITATS TSIDRATLS VFA AF+RW+AAT L
Sbjct: 142 AAALRGRHLYSYFPGGPMWPPFRRNLRYAITATSATSIDRATLSAVFARAFSRWAAATRL 201
Query: 202 NFTEAASAADADITIGFYGGDHGDGEAFDGPLGTLAHAFSPTNGRLHLDASEAWVAGGDV 261
FTE +SA++ADITIGFY GDHGDGEAFDGPLGTLAHAFSPT+GR HLDA+EAWVA GDV
Sbjct: 202 QFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAHAFSPTDGRFHLDAAEAWVASGDV 261
Query: 262 TRASS-NAAVDLESVAVHEIGHILGLGHSSAADSIMFPTLTSRTKKVNLATDDVAGIQGL 320
+ +SS AVDLESVAVHEIGH+LGLGHSS DSIM+PT+ + T+KV+L +DDV GIQ L
Sbjct: 262 STSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDSIMYPTIRTGTRKVDLESDDVLGIQSL 321
Query: 321 YGNNPNFKGVTP--PATSSREMDSAGAGELSRPW 352
YG NPNFKGVTP P+TSSREMD + A RPW
Sbjct: 322 YGTNPNFKGVTPTSPSTSSREMDGSAAAAGIRPW 355
>Os10g0557900 Peptidase M10A and M12B, matrixin and adamalysin family protein
Length = 355
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 133/290 (45%), Positives = 167/290 (57%), Gaps = 13/290 (4%)
Query: 44 WSAFKNLSGCHFGDERQGLGKLKDYLWHFGXXXXXXXXXXXXXFNDLFDADMELAIKMYQ 103
W +FK L G GL +LK YL FG D FD +E+A++ YQ
Sbjct: 36 WHSFKQLLDAGRGSHVTGLAELKRYLARFGYMAKPGRDT-----TDAFDEHLEVAVRRYQ 90
Query: 104 GNFGLDVTGDLDAATVSQMMAPRCGVAD--VVNGTST-MXXXXXXXXXXLYSYFPGSPRW 160
F L VTG LD AT+ Q+M+PRCGV D V S + +++F G PRW
Sbjct: 91 TRFSLPVTGRLDNATLDQIMSPRCGVGDDDVERPVSVALSPGAQGGVVSRFTFFKGEPRW 150
Query: 161 PRSR--TTLRYAITATSQTS-IDRATLSKVFASAFARWSAATTLNFTEAASAADADITIG 217
RS L YA++ T+ + A + VF AFARW+ + F E ADI +G
Sbjct: 151 TRSDPPIVLSYAVSPTATVGYLPPAAVRAVFQRAFARWARTIPVGFVETDDYEAADIKVG 210
Query: 218 FYGGDHGDGEAFDGPLGTLAHAFSPTNGRLHLDASEAWVAGGDVTRASSNAAVDLESVAV 277
FY G+HGDG FDGPLG L HAFSP NGRLHLDASE W DV +S A+DLESVA
Sbjct: 211 FYAGNHGDGVPFDGPLGILGHAFSPKNGRLHLDASEHWAVDFDVDATAS--AIDLESVAT 268
Query: 278 HEIGHILGLGHSSAADSIMFPTLTSRTKKVNLATDDVAGIQGLYGNNPNF 327
HEIGH+LGLGHS++ ++M+P++ R KKV L DDV G+Q LYG+NP F
Sbjct: 269 HEIGHVLGLGHSASPRAVMYPSIKPREKKVRLTVDDVEGVQALYGSNPQF 318
>Os10g0558150
Length = 261
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 113/186 (60%), Gaps = 11/186 (5%)
Query: 151 YSYFPGSPRWPR--SRTTLRYAITATSQTS-IDRATLSKVFASAFARWSAATTLNFTEAA 207
Y+++ G PRW R L YA++ T + + VF SAFARW+ ++F E
Sbjct: 48 YAFWTGKPRWTRHGRPMVLTYAVSHTDAVGYLPGDAVLAVFRSAFARWAEVIPVSFAEIT 107
Query: 208 SAADAD-----ITIGFYG-GDHGDGEAFDGPLGTLAHAFSPTNGRLHLDASEAWVAGGDV 261
+ DA I +GFYG G+HGDG FDGPL AHA P +GR+ DA+E W D+
Sbjct: 108 TEDDAAAAEADIRVGFYGAGEHGDGHPFDGPLNVYAHATGPEDGRIDFDAAERWAV--DL 165
Query: 262 TRASSNAAVDLESVAVHEIGHILGLGHSSAADSIMFPTLTSRTKKVNLATDDVAGIQGLY 321
+S AAVDLE+VA HEIGH LGL HS++ S+M+P + +R +KV L DDV GIQ LY
Sbjct: 166 AADASPAAVDLETVATHEIGHALGLDHSTSESSVMYPYVGTRERKVRLTVDDVEGIQELY 225
Query: 322 GNNPNF 327
G NP+F
Sbjct: 226 GVNPSF 231
>Os10g0558100
Length = 624
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 108/191 (56%), Gaps = 16/191 (8%)
Query: 151 YSYFPGSPRWPRSRTTLRYAITATSQTS-IDRATLSKVFASAFARWSAATTLNFTEAASA 209
+++FPG PRW R L YA++ T+ + + + SAFARW+ + F EA
Sbjct: 21 FTFFPGKPRWTRPDRVLTYAVSPTATADHLPPSAVRAALRSAFARWADVIPMRFLEAERY 80
Query: 210 ADADITIGFYGGDHG--DGEAFDGPL----------GTLAHAFSP-TNGRLHLDASEAWV 256
ADI +GFY G DG A G LAH+ P +G++HL A+ W
Sbjct: 81 DAADIKVGFYLYTDGRCDGCACIDSDDDDDDGDDCEGVLAHSSMPEKSGQIHLHAAHRWT 140
Query: 257 AGGDVTRASSNAAVDLESVAVHEIGHILGLGHSSAADSIMFPTLTSRTKKVNLATDDVAG 316
++ ++ AVDLESVA HEIGH+LGL HSS+ S+M+P ++ R +KV L TDDV G
Sbjct: 141 V--NLAADTAPLAVDLESVAAHEIGHVLGLDHSSSRSSMMYPFISCRERKVRLTTDDVHG 198
Query: 317 IQGLYGNNPNF 327
IQ LYG NP+F
Sbjct: 199 IQELYGANPHF 209
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 100/188 (53%), Gaps = 20/188 (10%)
Query: 151 YSYFPGSPRWPRSRTTLRYAITATSQTS-IDRATLSKVFASAFARWSAATTLNFTEAASA 209
+++ G PRW R L YA++ + + R + + F SA ARW+ T L F EAA
Sbjct: 388 FTFLWGRPRWNRPDMRLTYAVSPLATADHLPRDAVREAFRSALARWAEVTPLRFAEAARY 447
Query: 210 ADADITIGFY------GGDHGDGEAFDGPLGTLAHAFSPTNGRLHLDASEAWV------A 257
+ADI +GFY D G LAHA P +GR+HL A+ W A
Sbjct: 448 EEADIRVGFYLHTADGKCDACGCVCKGGGEEALAHAHPPQDGRIHLHAARKWAVTNVAGA 507
Query: 258 GGDVTRASSNAAVDLESVAVHEIGHILGLGHSSAADSIMFPTLTSRTKKVNLATDDVAGI 317
GGD + AVDLESVAVHEIGH LGLGHSS+ S+M+ KV+L DDV G+
Sbjct: 508 GGD----APPLAVDLESVAVHEIGHALGLGHSSSESSMMYRHYRG---KVSLTDDDVKGV 560
Query: 318 QGLYGNNP 325
Q LYG P
Sbjct: 561 QELYGAKP 568
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,111,884
Number of extensions: 447520
Number of successful extensions: 1136
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 6
Length of query: 371
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 269
Effective length of database: 11,709,973
Effective search space: 3149982737
Effective search space used: 3149982737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)