FiT-DB / Search/ Help/ Sample detail

Os06g0239100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase M10A and M12B, matrixin and adamalysin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.98 (0.0491) R2 : 0.488
β1 : 1.51 (0.179) R2dD : 0.077 R2D : 3.75e-05
β2 : 1.45 (0.117) R2dC : 0.176 R2C : 0.201
β3 : 1.9 (0.153) R2dE : 0.199 R2E : 0.119
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.04 (0.109) R2dN8 : 0.15 R2N8 : -0.0095
σ : 0.906
deviance : 378.14
__
_____
C
peak time of C : 0.752
E
wheather : radiation
threshold : 16.76
memory length : 1282
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11.4
open length of G : 1.86

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
363.44 0.896 5.98 1.51 1.46 1.84 -0.641 -2.15 1.03 0.863 16.02 1291 11.3 1.87
375.51 0.903 5.98 1.42 1.44 1.9 -0.78 -- 0.997 0.777 16.16 1286 11.4 1.89
365.1 0.89 5.98 1.54 1.46 1.83 -- -2.26 1.04 0.804 16.04 1290 11.3 1.88
378.14 0.906 5.98 1.51 1.45 1.9 -- -- 1.04 0.752 16.76 1282 11.4 1.86
475.17 1.02 5.97 1.32 -- 2 -- -1.98 1 -- 19.96 1209 11.5 1.8
500.36 1.05 6.1 1.14 1.66 -- -1.07 -- 0.581 0.63 -- -- -- --
505.24 1.05 6.1 1.18 1.67 -- -- -- 0.587 0.551 -- -- -- --
481.66 1.02 5.97 1.39 -- 2.34 -- -- 1.06 -- 19.98 1205 11.7 1.77
428.32 0.964 5.99 -- 1.4 1.98 -- -- 1 1.04 19.02 1269 11.4 1.9
679.51 1.22 6.07 1.24 -- -- -- -- 0.615 -- -- -- -- --
541.74 1.09 6.13 -- 1.68 -- -- -- 0.456 0.585 -- -- -- --
532.94 1.08 5.97 -- -- 2.32 -- -- 0.951 -- 19.93 1187 11.6 1.89
719.75 1.25 6.1 -- -- -- -- -- 0.478 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 386.85 radiation 20 1440 < th dose independent rect. 11 2
3 389.24 radiation 20 1440 < th dose dependent rect. 11 2
4 391.64 radiation 20 1440 < th dose independent rect. 11 5
5 392.23 radiation 20 1440 < th dose independent rect. 11 20
11 393.14 radiation 20 1440 < th dose independent rect. 11 13
13 393.19 radiation 20 1440 < th dose independent rect. 11 9
28 397.99 radiation 20 1440 < th dose dependent rect. 11 20
37 400.02 radiation 20 1440 < th dose dependent sin 22 NA
46 400.38 radiation 20 1440 < th dose dependent rect. 11 13
48 400.43 radiation 20 1440 < th dose dependent rect. 11 9
49 400.43 radiation 20 1440 < th dose dependent rect. 11 11
65 401.13 radiation 20 1440 < th dose dependent rect. 8 10
69 401.19 radiation 20 1440 < th dose dependent rect. 8 16
70 401.23 radiation 20 1440 < th dose dependent rect. 8 14
72 401.24 radiation 20 1440 < th dose dependent rect. 8 12
100 401.56 radiation 20 1440 < th dose independent sin 20 NA
115 401.75 radiation 20 1440 < th dose dependent rect. 8 8
193 403.40 radiation 20 1440 < th dose independent rect. 8 23
253 404.21 radiation 20 1440 < th dose independent rect. 8 16
257 404.23 radiation 20 1440 < th dose independent rect. 8 9
260 404.24 radiation 20 1440 < th dose independent rect. 8 12
266 404.26 radiation 20 1440 < th dose independent rect. 15 23
270 404.28 radiation 20 1440 < th dose independent rect. 8 19
274 404.29 radiation 20 1440 < th dose dependent rect. 17 23
281 404.55 radiation 20 1440 < th dose independent rect. 4 13
284 404.56 radiation 20 1440 < th dose independent rect. 6 11
286 404.56 radiation 20 1440 < th dose independent rect. 2 15
288 404.57 radiation 20 1440 < th dose independent rect. 18 23
290 404.58 radiation 20 1440 < th dose independent rect. 4 20
291 404.59 radiation 20 1440 < th dose independent rect. 6 18
293 404.59 radiation 20 1440 < th dose independent rect. 2 22
301 404.61 radiation 20 1440 < th dose independent rect. 22 19
305 404.62 radiation 20 1440 < th dose independent rect. 6 14
307 404.62 radiation 20 1440 < th dose independent rect. 4 16
350 404.67 radiation 20 1440 < th dose independent no NA NA
359 404.67 radiation 20 1440 < th dose independent rect. 21 23
362 404.68 radiation 20 1440 < th dose independent rect. 23 21
394 404.82 radiation 20 1440 < th dose dependent rect. 19 23
395 404.83 radiation 20 1440 < th dose dependent rect. 21 21
431 404.92 radiation 20 1440 < th dose dependent no NA NA
515 405.44 humidity 90 1440 < th dose dependent rect. 13 1
540 405.64 radiation 1 1440 > th dose dependent rect. 11 3
608 406.44 radiation 20 1440 > th dose independent rect. 11 2
624 406.73 humidity 50 1440 > th dose dependent rect. 13 1
704 407.26 radiation 1 1440 > th dose dependent rect. 11 5
749 407.84 radiation 1 1440 > th dose dependent rect. 11 20
759 407.93 radiation 1 1440 > th dose dependent rect. 11 7
816 408.66 humidity 70 1440 < th dose dependent rect. 15 1
928 409.55 humidity 70 1440 < th dose dependent rect. 13 3