BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0233800 Os06g0233800|Os06g0233800
         (371 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0233800  Conserved hypothetical protein                      510   e-145
Os02g0742700  Conserved hypothetical protein                      363   e-101
Os12g0160400  Basic helix-loop-helix dimerisation region bHL...    68   1e-11

>Os06g0233800 Conserved hypothetical protein
          Length = 371

 Score =  510 bits (1314), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/371 (71%), Positives = 267/371 (71%)

Query: 1   MDEQLSPVAVTHLLQHTLRSLCTSGDDSQWVYAVFWRILPRNYPPPKWDLPGGAYDRTRG 60
           MDEQLSPVAVTHLLQHTLRSLCTSGDDSQWVYAVFWRILPRNYPPPKWDLPGGAYDRTRG
Sbjct: 1   MDEQLSPVAVTHLLQHTLRSLCTSGDDSQWVYAVFWRILPRNYPPPKWDLPGGAYDRTRG 60

Query: 61  NRRNWILAWEDGFCNFXXXXXXXXXXXXXXXXXXECEETKQVGVAGGGLQPELFFKMSHD 120
           NRRNWILAWEDGFCNF                  ECEETKQVGVAGGGLQPELFFKMSHD
Sbjct: 61  NRRNWILAWEDGFCNFAATSAACGDGAAAAYAAAECEETKQVGVAGGGLQPELFFKMSHD 120

Query: 121 IYNYGEGLIGKVAADHSHKWVFKEPQEQEINLISSWNNPADSHPRTWEAQFQSGIQTIAL 180
           IYNYGEGLIGKVAADHSHKWVFKEPQEQEINLISSWNNPADSHPRTWEAQFQSGIQTIAL
Sbjct: 121 IYNYGEGLIGKVAADHSHKWVFKEPQEQEINLISSWNNPADSHPRTWEAQFQSGIQTIAL 180

Query: 181 IAVREGVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSSXXXXXXXXXXXXXX 240
           IAVREGVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSS              
Sbjct: 181 IAVREGVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSSAAAAFPGGPPDAAG 240

Query: 241 XXXXMMVSPPVPPELYVDXXXXXXXXXXXXXXXXXXXXXXXLEALLSKLXXXXXXXXXXX 300
               MMVSPPVPPELYVD                       LEALLSKL           
Sbjct: 241 WPAGMMVSPPVPPELYVDPYGGAAAGAVPPPSMQIMPSMSSLEALLSKLPSVVPAAAAPS 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXKEEAAEDDYVHCHGMDMAXXXXXXXXXXXXXAPLPSSYF 360
                                KEEAAEDDYVHCHGMDMA             APLPSSYF
Sbjct: 301 PPPGSSSMPPTGAAAASSAPPKEEAAEDDYVHCHGMDMATSSTNGGGESTGGAPLPSSYF 360

Query: 361 VNVGVKPSEGF 371
           VNVGVKPSEGF
Sbjct: 361 VNVGVKPSEGF 371



>Os02g0742700 Conserved hypothetical protein
          Length = 336

 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/226 (77%), Positives = 186/226 (82%), Gaps = 5/226 (2%)

Query: 1   MDEQLSPVAVTHLLQHTLRSLCTSGDDSQWVYAVFWRILPRNYPPPKWDLPGGAYDRTRG 60
           M+EQL+P+AVT LLQHTLR LCT GD SQWVYAVFWRILPRNYPPPKWDL GG YDR+RG
Sbjct: 1   MEEQLNPLAVTQLLQHTLRGLCTQGD-SQWVYAVFWRILPRNYPPPKWDLQGGVYDRSRG 59

Query: 61  NRRNWILAWEDGFCNFXXXXXXXXXXXXXXXXXXECEETKQVGVAGGGLQPELFFKMSHD 120
           NRRNWILAWEDGFCNF                        +V     GLQPELFFKMSHD
Sbjct: 60  NRRNWILAWEDGFCNFAASACDQEDTPAAAGYTDYAAAGHEVK----GLQPELFFKMSHD 115

Query: 121 IYNYGEGLIGKVAADHSHKWVFKEPQEQEINLISSWNNPADSHPRTWEAQFQSGIQTIAL 180
           IYNYGEGL+GKVAADH HKWV +E  E EINL++SWNNPADSHPRTWEAQFQSGI+TIAL
Sbjct: 116 IYNYGEGLVGKVAADHGHKWVSQEANEHEINLVTSWNNPADSHPRTWEAQFQSGIKTIAL 175

Query: 181 IAVREGVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSS 226
           IAVREGVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSS
Sbjct: 176 IAVREGVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSS 221



>Os12g0160400 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 880

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 53/196 (27%)

Query: 18  LRSLCTSGDDSQWVYAVFWRILPRNYPPPKWDLPGGAYDRTRGNRRNWILAWEDGFCNFX 77
           LR LC   ++++W YAVFW+ +             GA D          L WEDGFC   
Sbjct: 7   LRRLC---EEARWSYAVFWKAI-------------GAADPVH-------LVWEDGFCGHA 43

Query: 78  XXXXXXXXXXXXXXXXXECEETKQVGVAGGGLQPELFFK-MSHDIYNYGEGLIGKVAADH 136
                               E  + G   GG    L  K M+  ++  GEG IG+ A   
Sbjct: 44  SCSAG--------------SEASEAGCESGGAVCTLVRKIMASQVHVVGEGTIGRAAFTG 89

Query: 137 SHKWVFKEPQEQ---EINLISSWNNPADSHPRTWEAQFQSGIQTIALIAVR-EGVVQLGS 192
           +H+W+  E          + +  NN           QF++GI+TIA+I V   GV+QLGS
Sbjct: 90  NHQWIVHETANDHGLRSEVAAEMNN-----------QFRAGIKTIAIIPVLPRGVLQLGS 138

Query: 193 MKKVAEDLSYVVALRR 208
              + E++S V   ++
Sbjct: 139 TSVILENISSVQQYKK 154



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.136    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,423,790
Number of extensions: 443976
Number of successful extensions: 671
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 3
Length of query: 371
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 269
Effective length of database: 11,709,973
Effective search space: 3149982737
Effective search space used: 3149982737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)