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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0742700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0746) R2 : 0.308
β1 : -0.845 (0.264) R2dD : 0.0209 R2D : 0.012
β2 : 1.23 (0.165) R2dC : 0.0865 R2C : 0.0862
β3 : 0.206 (0.631) R2dE : 0.000832 R2E : 0.0102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -13 (2.82) R2dD*E : 0.172 R2D*E : 0.198
γ1 : -0.00297 (0.143) R2dN8 : 4.82e-06 R2N8 : -0.0141
σ : 1.21
deviance : 674.11
__
_____
C
peak time of C : 4.07
E
wheather : wind
threshold : 6.803
memory length : 2615
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.25
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
665.33 1.21 3.47 -0.903 1.26 0.18 -1.84 -12.8 -0.0326 4.27 7.001 2599 7.32 --
695.03 1.23 3.66 -0.555 1.17 2.61 -1.89 -- -0.14 4.32 6.893 2500 7.53 --
674.11 1.21 3.46 -0.845 1.23 0.206 -- -13 -0.00297 4.07 6.803 2615 7.25 --
703.03 1.23 3.63 -0.386 1.24 2.83 -- -- -0.0594 4.16 6.89 2517 8.19 --
757.91 1.28 3.46 -0.778 -- 0.333 -- -13.1 0.0356 -- 6.641 2615 7.11 --
821.65 1.34 3.71 -1.17 1.37 -- -2.39 -- -0.389 4.05 -- -- -- --
837.74 1.36 3.7 -1.14 1.35 -- -- -- -0.376 3.86 -- -- -- --
787.54 1.31 3.63 -0.272 -- 2.96 -- -- 0.0141 -- 6.77 2508 8.7 --
706.13 1.24 3.62 -- 1.25 2.89 -- -- 0.0204 4.14 6.939 2574 9.11 --
938.59 1.43 3.71 -1.08 -- -- -- -- -0.339 -- -- -- -- --
871.99 1.38 3.67 -- 1.33 -- -- -- -0.249 3.87 -- -- -- --
789.27 1.31 3.62 -- -- 3.06 -- -- 0.0519 -- 6.7 2508 8.94 --
969.59 1.45 3.68 -- -- -- -- -- -0.219 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 658.32 precipitation 0.1 270 > th dose dependent rect. 2 2
2 658.90 precipitation 0.1 270 > th dose independent rect. 2 2
4 665.51 radiation 20.0 1440 < th dose independent rect. 11 2
7 673.02 wind 9.0 4320 < th dose independent rect. 17 6
9 674.07 wind 9.0 4320 < th dose independent rect. 17 11
10 674.40 wind 9.0 4320 < th dose independent rect. 17 9
11 674.54 wind 9.0 4320 > th dose independent rect. 17 6
12 674.63 wind 9.0 4320 > th dose dependent rect. 17 6
13 674.92 wind 7.0 4320 > th dose dependent rect. 17 11
14 675.09 wind 9.0 4320 > th dose independent rect. 17 11
15 675.17 wind 5.0 4320 > th dose independent rect. 24 1
19 675.54 wind 9.0 4320 > th dose independent rect. 17 9
23 675.81 wind 5.0 4320 < th dose independent rect. 24 1
50 679.03 wind 9.0 4320 < th dose independent rect. 17 16
64 679.71 wind 7.0 4320 < th dose independent rect. 18 3
66 679.81 wind 7.0 4320 > th dose independent rect. 18 3
74 680.22 wind 9.0 43200 > th dose independent rect. 16 1
94 681.97 temperature 20.0 1440 < th dose independent rect. 23 8
96 681.99 temperature 20.0 1440 < th dose independent rect. 5 1
105 682.50 temperature 20.0 1440 > th dose independent rect. 22 9
117 683.15 temperature 20.0 1440 > th dose independent rect. 5 2
118 683.18 wind 9.0 4320 > th dose dependent rect. 17 1
120 683.24 temperature 20.0 270 > th dose independent rect. 21 9
135 683.90 temperature 20.0 1440 > th dose independent rect. 23 2
141 684.00 temperature 20.0 1440 < th dose independent rect. 23 2
153 684.34 temperature 20.0 1440 > th dose independent rect. 22 4
171 685.10 temperature 20.0 1440 < th dose independent rect. 3 4
192 685.90 temperature 20.0 720 > th dose independent rect. 16 14
210 686.62 temperature 20.0 720 > th dose independent rect. 18 10
215 686.84 wind 5.0 4320 > th dose dependent rect. 24 1
226 687.10 temperature 20.0 90 > th dose independent rect. 13 17
240 687.47 atmosphere 1005.0 720 > th dose independent rect. 19 6
270 688.05 humidity 90.0 14400 > th dose independent rect. 23 2
288 688.62 wind 1.0 43200 > th dose independent rect. 2 1
296 688.75 wind 9.0 4320 < th dose independent rect. 17 1
310 689.06 temperature 20.0 1440 > th dose independent sin 9 NA
323 689.36 temperature 20.0 1440 < th dose independent sin 9 NA
326 689.38 temperature 20.0 720 > th dose independent sin 13 NA
332 689.59 temperature 20.0 4320 > th dose independent rect. 18 5
350 689.93 humidity 90.0 14400 > th dose independent rect. 22 5
359 690.06 humidity 90.0 14400 > th dose independent rect. 21 7
385 690.69 wind 1.0 43200 < th dose independent rect. 2 1
415 691.24 wind 7.0 4320 > th dose dependent sin 12 NA
481 692.69 wind 9.0 4320 > th dose independent sin 12 NA
497 693.06 temperature 20.0 270 > th dose independent sin 11 NA
501 693.10 temperature 20.0 270 > th dose independent rect. 10 20
509 693.24 atmosphere 1005.0 720 < th dose independent rect. 21 1
521 693.43 wind 9.0 4320 < th dose independent sin 12 NA
531 693.67 humidity 90.0 14400 > th dose independent rect. 22 9
534 693.70 precipitation 0.1 270 > th dose dependent rect. 23 5
542 693.84 wind 9.0 43200 < th dose independent rect. 16 1
576 694.45 temperature 20.0 720 < th dose independent sin 14 NA
588 694.60 temperature 20.0 1440 > th dose independent rect. 3 1
600 694.83 temperature 20.0 270 < th dose independent sin 11 NA
611 695.00 temperature 20.0 1440 < th dose independent rect. 3 1
618 695.18 precipitation 0.1 270 > th dose independent rect. 23 5
657 695.95 atmosphere 1005.0 720 < th dose independent rect. 19 4
663 696.03 humidity 90.0 14400 < th dose independent rect. 22 3
682 696.27 atmosphere 1005.0 720 < th dose independent rect. 19 6
695 696.45 temperature 20.0 270 < th dose independent rect. 18 15
730 697.15 radiation 30.0 14400 > th dose independent rect. 7 1
777 697.75 radiation 1.0 14400 < th dose dependent rect. 3 2
789 697.94 wind 9.0 4320 > th dose dependent rect. 21 2
790 697.97 wind 9.0 4320 > th dose dependent rect. 21 5
800 698.12 wind 9.0 4320 > th dose independent rect. 21 1
813 698.20 wind 9.0 4320 > th dose independent rect. 21 5
839 698.53 wind 9.0 43200 > th dose dependent rect. 16 1
849 698.69 radiation 40.0 1440 < th dose dependent rect. 11 2
865 699.02 radiation 20.0 1440 < th dose independent rect. 11 22
875 699.12 wind 1.0 43200 < th dose dependent rect. 2 1
975 700.37 humidity 90.0 14400 > th dose independent sin 11 NA
978 700.39 radiation 1.0 14400 < th dose independent rect. 18 11