BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0742700 Os02g0742700|Os02g0742700
         (336 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0742700  Conserved hypothetical protein                      571   e-163
Os06g0233800  Conserved hypothetical protein                      402   e-112
Os12g0160400  Basic helix-loop-helix dimerisation region bHL...    70   2e-12

>Os02g0742700 Conserved hypothetical protein
          Length = 336

 Score =  571 bits (1472), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 293/336 (87%), Positives = 293/336 (87%)

Query: 1   MEEQLNPLAVTQLLQHTLRGLCTQGDSQWVYAVFWRILPRNYPPPKWDLQGGVYDRSRGN 60
           MEEQLNPLAVTQLLQHTLRGLCTQGDSQWVYAVFWRILPRNYPPPKWDLQGGVYDRSRGN
Sbjct: 1   MEEQLNPLAVTQLLQHTLRGLCTQGDSQWVYAVFWRILPRNYPPPKWDLQGGVYDRSRGN 60

Query: 61  RRNWILAWEDGFCNFAASACDQEXXXXXXXXXXXXXXXHEVKGLQPELFFKMSHDIYNYG 120
           RRNWILAWEDGFCNFAASACDQE               HEVKGLQPELFFKMSHDIYNYG
Sbjct: 61  RRNWILAWEDGFCNFAASACDQEDTPAAAGYTDYAAAGHEVKGLQPELFFKMSHDIYNYG 120

Query: 121 EGLVGKVAADHGHKWVSQEANEHEINLVTSWNNPADSHPRTWEAQFQSGIKTIALIAVRE 180
           EGLVGKVAADHGHKWVSQEANEHEINLVTSWNNPADSHPRTWEAQFQSGIKTIALIAVRE
Sbjct: 121 EGLVGKVAADHGHKWVSQEANEHEINLVTSWNNPADSHPRTWEAQFQSGIKTIALIAVRE 180

Query: 181 GVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSSAAFPGAGGLQDAAWAPSPT 240
           GVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSSAAFPGAGGLQDAAWAPSPT
Sbjct: 181 GVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSSAAFPGAGGLQDAAWAPSPT 240

Query: 241 MDLYDPYYGAHAAAAQMHHIVPSMSSLEALLSKLPSVXXXXXXXXXXXXXXXXSVAKEEL 300
           MDLYDPYYGAHAAAAQMHHIVPSMSSLEALLSKLPSV                SVAKEEL
Sbjct: 241 MDLYDPYYGAHAAAAQMHHIVPSMSSLEALLSKLPSVGPTAAPGAIRGAIGGGSVAKEEL 300

Query: 301 XXXXXXXXXXXXESTSAATTPLVPYYVDVAKPDEGF 336
                       ESTSAATTPLVPYYVDVAKPDEGF
Sbjct: 301 DDAMDAAGNGGGESTSAATTPLVPYYVDVAKPDEGF 336



>Os06g0233800 Conserved hypothetical protein
          Length = 371

 Score =  402 bits (1033), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/289 (72%), Positives = 225/289 (77%), Gaps = 15/289 (5%)

Query: 1   MEEQLNPLAVTQLLQHTLRGLCTQGD-SQWVYAVFWRILPRNYPPPKWDLQGGVYDRSRG 59
           M+EQL+P+AVT LLQHTLR LCT GD SQWVYAVFWRILPRNYPPPKWDL GG YDR+RG
Sbjct: 1   MDEQLSPVAVTHLLQHTLRSLCTSGDDSQWVYAVFWRILPRNYPPPKWDLPGGAYDRTRG 60

Query: 60  NRRNWILAWEDGFCNFAASACDQEXXXXXXXXXXXXXXXHEVK----GLQPELFFKMSHD 115
           NRRNWILAWEDGFCNFAA++                    +V     GLQPELFFKMSHD
Sbjct: 61  NRRNWILAWEDGFCNFAATSAACGDGAAAAYAAAECEETKQVGVAGGGLQPELFFKMSHD 120

Query: 116 IYNYGEGLVGKVAADHGHKWVSQEANEHEINLVTSWNNPADSHPRTWEAQFQSGIKTIAL 175
           IYNYGEGL+GKVAADH HKWV +E  E EINL++SWNNPADSHPRTWEAQFQSGI+TIAL
Sbjct: 121 IYNYGEGLIGKVAADHSHKWVFKEPQEQEINLISSWNNPADSHPRTWEAQFQSGIQTIAL 180

Query: 176 IAVREGVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSSAAFPGAGGLQDAAW 235
           IAVREGVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSSAA    GG  DAA 
Sbjct: 181 IAVREGVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSSAAAAFPGGPPDAAG 240

Query: 236 APSPTM-------DLY-DPYYGAHAAAA--QMHHIVPSMSSLEALLSKL 274
            P+  M       +LY DPY GA A A       I+PSMSSLEALLSKL
Sbjct: 241 WPAGMMVSPPVPPELYVDPYGGAAAGAVPPPSMQIMPSMSSLEALLSKL 289



>Os12g0160400 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 880

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 50/242 (20%)

Query: 18  LRGLCTQGDSQWVYAVFWRILPRNYPPPKWDLQGGVYDRSRGNRRNWILAWEDGFCNFAA 77
           LR LC +  ++W YAVFW+ +    P         V+           L WEDGFC  A+
Sbjct: 7   LRRLCEE--ARWSYAVFWKAIGAADP---------VH-----------LVWEDGFCGHAS 44

Query: 78  SACDQEXXXXXXXXXXXXXXXHEVKGLQPELFFK-MSHDIYNYGEGLVGKVAADHGHKWV 136
            +   E                E  G    L  K M+  ++  GEG +G+ A    H+W+
Sbjct: 45  CSAGSEASEAGC----------ESGGAVCTLVRKIMASQVHVVGEGTIGRAAFTGNHQWI 94

Query: 137 SQE-ANEHEIN--LVTSWNNPADSHPRTWEAQFQSGIKTIALIAVR-EGVVQLGSMKKVA 192
             E AN+H +   +    NN           QF++GIKTIA+I V   GV+QLGS   + 
Sbjct: 95  VHETANDHGLRSEVAAEMNN-----------QFRAGIKTIAIIPVLPRGVLQLGSTSVIL 143

Query: 193 EDLSYVVALRRKFGYLESIPGVLLPHPSSAAFPGAGGLQDAAWAPSPTMDLYDPYYGAHA 252
           E++S V   ++    L +   ++    +SA    +  +Q  +    P++  Y+  YG  A
Sbjct: 144 ENISSVQQYKKLCCQLNNRSSMVA--SASAKNDLSQKVQSRSLHGLPSIHPYEQCYGHDA 201

Query: 253 AA 254
            A
Sbjct: 202 RA 203



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,947,352
Number of extensions: 500405
Number of successful extensions: 1072
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1067
Number of HSP's successfully gapped: 3
Length of query: 336
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 235
Effective length of database: 11,762,187
Effective search space: 2764113945
Effective search space used: 2764113945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)