BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0742700 Os02g0742700|Os02g0742700
(336 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60060.1 | chr1:22139282-22141585 FORWARD LENGTH=387 357 5e-99
AT5G53900.2 | chr5:21881375-21883133 REVERSE LENGTH=378 129 2e-30
AT3G15240.2 | chr3:5133681-5135797 FORWARD LENGTH=363 124 9e-29
AT1G06150.1 | chr1:1867129-1873194 REVERSE LENGTH=1323 75 4e-14
AT2G31280.3 | chr2:13339678-13343424 FORWARD LENGTH=738 75 6e-14
AT2G27230.1 | chr2:11650895-11653840 FORWARD LENGTH=651 65 5e-11
>AT1G60060.1 | chr1:22139282-22141585 FORWARD LENGTH=387
Length = 386
Score = 357 bits (916), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 185/305 (60%), Positives = 210/305 (68%), Gaps = 29/305 (9%)
Query: 1 MEEQLNPLAVTQLLQHTLRGLCTQGDSQWVYAVFWRILPRNYPPPKWDLQGGVYDRSRGN 60
MEE LNPLAVT LLQHTLR LC +SQWVYAVFWRILPRNYPPPKWD QG YDRSRGN
Sbjct: 1 MEEHLNPLAVTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWDGQGA-YDRSRGN 59
Query: 61 RRNWILAWEDGFCNFAASACDQEXXXXXXXXXXXXXXXH----EVKGLQPELFFKMSHDI 116
RRNWIL WEDGFCNFAASA + + + +GLQPELFFKMSH+I
Sbjct: 60 RRNWILVWEDGFCNFAASAAEMSSGEGSGGGGGSAAYGNSDFQQYQGLQPELFFKMSHEI 119
Query: 117 YNYGEGLVGKVAADHGHKWVSQEANEHEINLVTSWNNPADSHPRTWEAQFQSGIKTIALI 176
YNYGEGL+GKVAADH HKW+ +E N+ EIN +++W+N ADS+PRTWEAQFQSGIKTIALI
Sbjct: 120 YNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNSADSYPRTWEAQFQSGIKTIALI 179
Query: 177 AVREGVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSSAAFPGAGGLQDAAW- 235
+VREGVVQLG++ KV EDLSYVV LR+K Y+ESIPGVLLPHPSS+ +P W
Sbjct: 180 SVREGVVQLGAVHKVIEDLSYVVMLRKKLSYIESIPGVLLPHPSSSGYPFINASPSDTWH 239
Query: 236 ----APSPTMDLYDPYYGAHAAAAQMHH-------------------IVPSMSSLEALLS 272
AP + Y+ H + H I PSMSSLEALLS
Sbjct: 240 FPGVAPPHQQPEHQFYHSDHNHRFLIGHHNQPQAVGGAAPPLPLSMKITPSMSSLEALLS 299
Query: 273 KLPSV 277
KLPSV
Sbjct: 300 KLPSV 304
>AT5G53900.2 | chr5:21881375-21883133 REVERSE LENGTH=378
Length = 377
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 105/192 (54%), Gaps = 18/192 (9%)
Query: 14 LQHTLRGLCTQGDSQWVYAVFWRILPRNYPPPKWDLQGGVYDRSRGNRRNWILAWEDGFC 73
L LR +C D W+Y+VFW I PR P+ ++GG + + +L WEDGFC
Sbjct: 21 LHEALRSVCFNSD--WIYSVFWTIRPR----PR--VRGGNGCKIGDESGSLMLMWEDGFC 72
Query: 74 NFAASACDQEXXXXXXXXXXXXXXXHEVKGLQPELFFKMSHDIYNYGEGLVGKVAADHGH 133
S HE + L + F KMS +YNYGEGL+GKVA+D H
Sbjct: 73 GGGRSE---------DLCLETDIEGHE-EDLVRKAFSKMSIQLYNYGEGLMGKVASDKCH 122
Query: 134 KWVSQEANEHEINLVTSWNNPADSHPRTWEAQFQSGIKTIALIAVREGVVQLGSMKKVAE 193
KWV +E +E E NL W + D+ P W QF+SGI+TIA+I G++QLGS K + E
Sbjct: 123 KWVFKEPSESEPNLANYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPE 182
Query: 194 DLSYVVALRRKF 205
DL +V+ +R+ F
Sbjct: 183 DLHFVLRMRQMF 194
>AT3G15240.2 | chr3:5133681-5135797 FORWARD LENGTH=363
Length = 362
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 106/206 (51%), Gaps = 26/206 (12%)
Query: 14 LQHTLRGLCTQGDSQWVYAVFWRILPRNYPPPKWDLQGGVYDRSRGNRR-NWILAWEDGF 72
L LR +C D W Y+VFW I PR P+ ++GG G+ + +L WEDG+
Sbjct: 34 LHDALRTVCLNTD--WTYSVFWSIRPR----PR--VRGGGNGCKVGDDNGSLMLMWEDGY 85
Query: 73 CNFAASACDQEXXXXXXXXXXXXXXXHEVKGLQP--ELFFKMSHDIYNYGEGLVGKVAAD 130
C +++G P + F KMS +YNYGEGL+GKVA+D
Sbjct: 86 CRGRGGT---------------EGCYGDMEGEDPVRKSFSKMSIQLYNYGEGLMGKVASD 130
Query: 131 HGHKWVSQEANEHEINLVTSWNNPADSHPRTWEAQFQSGIKTIALIAVREGVVQLGSMKK 190
HKWV +E E E N + W + D+ P W QF+SGI+TIA+I G++QLGS K
Sbjct: 131 KCHKWVFKEQTESESNASSYWQSSFDAIPSEWNDQFESGIRTIAVIQAGHGLLQLGSCKI 190
Query: 191 VAEDLSYVVALRRKFGYLESIPGVLL 216
+ EDL +V+ +R F L G L
Sbjct: 191 IPEDLHFVLRMRHTFESLGYQSGFYL 216
>AT1G06150.1 | chr1:1867129-1873194 REVERSE LENGTH=1323
Length = 1322
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 87/207 (42%), Gaps = 70/207 (33%)
Query: 14 LQHTLRGLCTQGDSQWVYAVFWRILPRNYPPPKWDLQGGVYDRSRGNRRNWILAWEDGFC 73
LQ LR +C+ D W YAVFW++ N+ P +L ED +C
Sbjct: 5 LQQILRSICSNTD--WNYAVFWKL---NHHSP------------------MVLTLEDVYC 41
Query: 74 NFAASACDQEXXXXXXXXXXXXXXXHEVKGLQPELFF--------------KMSHDIYNY 119
HE +GL PE KMS+ +++
Sbjct: 42 -----------------------VNHE-RGLMPESLHGGRHAHDPLGLAVAKMSYHVHSL 77
Query: 120 GEGLVGKVAADHGHKWVSQEANEHEINLVTSWNNPADSHPRTWEAQFQSGIKTIALIAVR 179
GEG+VG+VA H+W+ E + + N WE+Q +GIKTI ++AV
Sbjct: 78 GEGIVGQVAISGQHQWIFSEYLNDSHSTLQVHNG--------WESQISAGIKTILIVAVG 129
Query: 180 E-GVVQLGSMKKVAEDLSYVVALRRKF 205
GVVQLGS+ KV ED + V +R F
Sbjct: 130 SCGVVQLGSLCKVEEDPALVTHIRHLF 156
>AT2G31280.3 | chr2:13339678-13343424 FORWARD LENGTH=738
Length = 737
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 88/192 (45%), Gaps = 49/192 (25%)
Query: 15 QHTLRGLCTQGDSQWVYAVFWRILPRNYPPPKWDLQGGVYDRSRGNRRNWILAWEDGFCN 74
Q L+ C D W YAVFW++ RG+R +L ED + +
Sbjct: 6 QEILKSFCFNTD--WDYAVFWQL------------------NHRGSR--MVLTLEDAYYD 43
Query: 75 FAASACDQEXXXXXXXXXXXXXXXHEVKGLQPELFFKMSHDIYNYGEGLVGKVAADHGHK 134
+ H+ GL KMS+ +Y+ GEG+VG+VA H+
Sbjct: 44 HHGT---------------NMHGAHDPLGLA---VAKMSYHVYSLGEGIVGQVAVSGEHQ 85
Query: 135 WVSQEANEHEINLVTSWNNPADSHPRTWEAQFQSGIKTIALIAVRE-GVVQLGSMKKVAE 193
WV E N + N ++N WE+Q +GIKTI ++AV GVVQLGS+ KV E
Sbjct: 86 WVFPE-NYNNCNSAFEFHN-------VWESQISAGIKTILVVAVGPCGVVQLGSLCKVNE 137
Query: 194 DLSYVVALRRKF 205
D+++V +R F
Sbjct: 138 DVNFVNHIRHLF 149
>AT2G27230.1 | chr2:11650895-11653840 FORWARD LENGTH=651
Length = 650
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 88/209 (42%), Gaps = 46/209 (22%)
Query: 13 LLQHTLRGLCTQGDSQWVYAVFWRILPRNYPPPKWDLQGGVYDRSRGNRRNWILAWEDGF 72
LL+ LR +C ++QW YAVFW+I +N W+ + S RR
Sbjct: 4 LLREALRSMCV--NNQWSYAVFWKIGCQNSSLLIWEECYNETESSSNPRR---------L 52
Query: 73 CNFAASACDQEXXXXXXXXXXXXXXXHEVKGLQPELFFKMSHDIYNYGEGLVGKVAADHG 132
C E +V+ L + +++ I GEGLVG+ A
Sbjct: 53 CGLGVDTQGNE----------------KVQLLTNRMM--LNNRIILVGEGLVGRAAFTGH 94
Query: 133 HKWVSQEANEHEINLVTSWNNPADSHP----RTWEAQFQSGIKTIALI-AVREGVVQLGS 187
H+W+ L S+N D HP QF +GI+T+A+ V GVVQLGS
Sbjct: 95 HQWI----------LANSFNR--DVHPPEVINEMLLQFSAGIQTVAVFPVVPHGVVQLGS 142
Query: 188 MKKVAEDLSYVVALRRKFGYLESIPGVLL 216
+ E+L +V ++ L +PG LL
Sbjct: 143 SLPIMENLGFVNDVKGLILQLGCVPGALL 171
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,151,796
Number of extensions: 279280
Number of successful extensions: 552
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 6
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)