BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0226500 Os06g0226500|AK071601
         (87 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0226500  Basic helix-loop-helix dimerisation region bHL...   145   7e-36
Os10g0403800                                                      109   6e-25
Os02g0747900  Helix-loop-helix DNA-binding domain containing...   100   2e-22
Os03g0171700  Basic helix-loop-helix dimerisation region bHL...    99   6e-22
Os10g0404300                                                       83   4e-17
Os03g0171300  Similar to DNA-binding protein-like                  83   4e-17
Os04g0641700                                                       79   6e-16

>Os06g0226500 Basic helix-loop-helix dimerisation region bHLH domain containing
          protein
          Length = 87

 Score =  145 bits (366), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 16 INELISKLQSLLPSSRRRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDHN 75
          INELISKLQSLLPSSRRRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDHN
Sbjct: 16 INELISKLQSLLPSSRRRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDHN 75

Query: 76 SPGAEIIRSLLR 87
          SPGAEIIRSLLR
Sbjct: 76 SPGAEIIRSLLR 87



>Os10g0403800 
          Length = 88

 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 64/74 (86%), Gaps = 2/74 (2%)

Query: 16 INELISKLQSLLP-SSRRRGANQAS-TTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMD 73
          INELISKLQSLLP SSRRRGA   S  TKLLKE CSYIKSLHREVDDLS+RLS+LMA MD
Sbjct: 15 INELISKLQSLLPESSRRRGATSRSPATKLLKEMCSYIKSLHREVDDLSERLSELMATMD 74

Query: 74 HNSPGAEIIRSLLR 87
           NSP A+IIRSLLR
Sbjct: 75 SNSPQADIIRSLLR 88



>Os02g0747900 Helix-loop-helix DNA-binding domain containing protein
          Length = 53

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 50/51 (98%)

Query: 37 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDHNSPGAEIIRSLLR 87
          QASTTKLLKETC+YIKSLHREVDDLSDRLSDLMA MDHNSPGAEIIRS+LR
Sbjct: 2  QASTTKLLKETCNYIKSLHREVDDLSDRLSDLMATMDHNSPGAEIIRSILR 52



>Os03g0171700 Basic helix-loop-helix dimerisation region bHLH domain containing
          protein
          Length = 91

 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/73 (76%), Positives = 61/73 (83%), Gaps = 1/73 (1%)

Query: 16 INELISKLQSLLPSSRRRGANQASTT-KLLKETCSYIKSLHREVDDLSDRLSDLMAGMDH 74
          INELISKLQ+LLP S R      S+  KLLKETCSYIKSLHREVDDLSDRLS+LM+ MD+
Sbjct: 19 INELISKLQALLPESSRSRGASRSSASKLLKETCSYIKSLHREVDDLSDRLSELMSTMDN 78

Query: 75 NSPGAEIIRSLLR 87
          NSP AEIIRSLLR
Sbjct: 79 NSPQAEIIRSLLR 91



>Os10g0404300 
          Length = 91

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 56/71 (78%)

Query: 16 INELISKLQSLLPSSRRRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDHN 75
          I +L+SKLQ+LLP +R R  ++  + ++L+ETCSYI+SLHREVDDLS+RL++L+A  D +
Sbjct: 20 IGDLVSKLQALLPEARLRSNDRVPSARVLQETCSYIRSLHREVDDLSERLAELLAAADVS 79

Query: 76 SPGAEIIRSLL 86
          +  A +IR LL
Sbjct: 80 TAQAAVIRGLL 90



>Os03g0171300 Similar to DNA-binding protein-like
          Length = 92

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 58/71 (81%)

Query: 16 INELISKLQSLLPSSRRRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDHN 75
          I++L+SKLQ LLP +R R  ++  ++++L+ETC+YI+SLH+EVDDLS+RLS+L+A  D +
Sbjct: 21 ISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLHQEVDDLSERLSELLATSDMS 80

Query: 76 SPGAEIIRSLL 86
          S  A IIRSLL
Sbjct: 81 SAQAAIIRSLL 91



>Os04g0641700 
          Length = 104

 Score = 79.3 bits (194), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 56/72 (77%), Gaps = 1/72 (1%)

Query: 16  INELISKLQSLLPSSR-RRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDH 74
           I EL+SKLQ+LLP S+ R GA++ S  ++L+ETCSYI+SLH+EVD+LS+ L+ L+A  D 
Sbjct: 32  IAELLSKLQALLPESQARNGAHRGSAARVLQETCSYIRSLHQEVDNLSETLAQLLASPDV 91

Query: 75  NSPGAEIIRSLL 86
            S  A +IRSLL
Sbjct: 92  TSDQAAVIRSLL 103



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,135,149
Number of extensions: 60831
Number of successful extensions: 305
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 7
Length of query: 87
Length of database: 17,035,801
Length adjustment: 57
Effective length of query: 30
Effective length of database: 14,059,603
Effective search space: 421788090
Effective search space used: 421788090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)