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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0747900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Helix-loop-helix DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.0549) R2 : 0.222
β1 : -1.43 (0.201) R2dD : 0.0895 R2D : 0.0584
β2 : 1.2 (0.142) R2dC : 0.121 R2C : 0.104
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.55 (0.117) R2dN8 : 0.0504 R2N8 : 0.013
σ : 1.03
deviance : 485.5
__
_____
C
peak time of C : 6.92
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
462.22 1.01 3.96 -1.56 1.18 -0.659 1.45 -0.597 -0.374 7.34 62.27 1318 -- --
462.52 1 3.96 -1.55 1.19 -0.674 1.47 -- -0.36 7.32 63 1315 -- --
467.52 1.01 3.96 -1.53 1.17 -0.648 -- -0.519 -0.379 7.25 63 1315 -- --
468.04 1.01 3.97 -1.55 1.18 -0.683 -- -- -0.366 7.21 63.37 1321 -- --
540.81 1.08 3.98 -1.51 -- -0.661 -- -0.509 -0.345 -- 63 1381 -- --
480.42 1.03 4.01 -1.45 1.19 -- 1.4 -- -0.546 7.03 -- -- -- --
485.5 1.03 4.01 -1.43 1.2 -- -- -- -0.55 6.92 -- -- -- --
541.4 1.08 3.99 -1.53 -- -0.696 -- -- -0.334 -- 63.13 1381 -- --
529.91 1.07 3.94 -- 1.18 -0.482 -- -- -0.248 7.18 63.87 1338 -- --
560.71 1.11 4.03 -1.4 -- -- -- -- -0.527 -- -- -- -- --
539.29 1.09 3.97 -- 1.18 -- -- -- -0.391 6.99 -- -- -- --
601.81 1.14 3.96 -- -- -0.515 -- -- -0.217 -- 63.58 1392 -- --
612.67 1.16 4 -- -- -- -- -- -0.372 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 448.62 humidity 50 1440 < th dose independent rect. 16 1
2 448.67 humidity 50 1440 < th dose dependent rect. 16 1
3 450.51 wind 1 270 < th dose independent rect. 4 1
4 451.35 wind 1 270 < th dose dependent rect. 4 1
5 452.79 temperature 30 720 > th dose dependent rect. 18 1
20 452.98 humidity 50 1440 > th dose independent rect. 16 1
36 455.02 wind 1 90 < th dose dependent rect. 4 8
38 455.33 temperature 25 270 > th dose independent rect. 14 10
40 455.75 wind 1 90 < th dose independent rect. 4 8
44 456.12 wind 1 90 < th dose dependent rect. 4 4
46 456.45 wind 3 10 < th dose dependent rect. 4 8
47 456.51 humidity 80 14400 > th dose independent rect. 23 3
50 456.66 humidity 90 90 > th dose dependent rect. 4 1
54 456.92 humidity 80 14400 > th dose independent rect. 24 1
64 457.42 humidity 80 14400 < th dose independent rect. 22 10
66 457.45 humidity 80 14400 < th dose independent rect. 22 4
70 457.51 wind 3 10 < th dose dependent rect. 4 6
81 457.77 humidity 80 14400 < th dose dependent rect. 22 10
87 457.91 humidity 80 14400 < th dose independent rect. 1 1
97 458.01 wind 1 10 < th dose independent rect. 4 9
102 458.08 humidity 90 90 > th dose independent rect. 4 1
112 458.21 wind 1 90 < th dose dependent rect. 4 13
118 458.23 humidity 70 720 < th dose dependent rect. 18 15
121 458.29 temperature 20 90 > th dose dependent rect. 4 1
131 458.47 humidity 70 720 > th dose independent rect. 19 8
133 458.49 wind 1 90 < th dose independent rect. 4 4
135 458.52 humidity 80 14400 < th dose dependent rect. 24 1
138 458.54 humidity 80 14400 < th dose dependent rect. 22 4
150 458.65 humidity 60 720 < th dose independent rect. 18 15
163 458.80 wind 1 10 < th dose independent rect. 4 6
175 458.93 humidity 70 720 < th dose dependent rect. 18 1
184 459.03 wind 1 30 > th dose independent rect. 1 15
247 459.46 wind 1 90 < th dose dependent rect. 4 19
249 459.49 wind 3 10 < th dose dependent rect. 4 2
253 459.53 temperature 25 10 < th dose independent rect. 4 4
256 459.54 temperature 20 90 > th dose independent rect. 4 1
259 459.57 temperature 30 43200 > th dose dependent rect. 8 1
273 459.58 temperature 25 10 < th dose independent rect. 4 2
280 459.69 temperature 25 90 < th dose independent rect. 4 1
285 459.76 wind 1 10 < th dose independent rect. 4 2
306 460.06 humidity 70 720 < th dose independent rect. 18 2
319 460.12 wind 5 10 < th dose dependent rect. 4 19
322 460.18 wind 7 14400 > th dose independent rect. 12 1
350 460.46 wind 3 10 < th dose dependent rect. 4 17
351 460.47 temperature 20 90 > th dose dependent rect. 16 9
358 460.54 wind 9 14400 < th dose independent rect. 12 1
362 460.62 humidity 80 14400 > th dose independent rect. 5 1
364 460.65 humidity 60 1440 < th dose independent rect. 16 20
366 460.67 humidity 90 10 > th dose independent rect. 4 2
368 460.68 temperature 30 43200 > th dose independent rect. 8 1
386 460.71 humidity 60 1440 > th dose independent sin 11 NA
387 460.71 humidity 60 1440 > th dose independent rect. 14 21
391 460.77 humidity 60 1440 < th dose independent sin 11 NA
394 460.77 humidity 60 1440 < th dose dependent rect. 15 21
401 460.83 wind 7 14400 > th dose dependent rect. 12 1
406 460.86 humidity 90 10 > th dose dependent rect. 4 2
412 460.91 humidity 80 4320 > th dose dependent rect. 3 2
414 460.92 humidity 60 1440 > th dose independent rect. 16 19
417 460.96 humidity 80 14400 < th dose independent rect. 5 1
421 461.00 temperature 25 270 > th dose independent sin 15 NA
461 461.14 temperature 25 10 < th dose independent rect. 23 5
473 461.15 temperature 25 720 > th dose dependent rect. 21 2
480 461.18 wind 9 14400 < th dose independent rect. 20 18
483 461.22 humidity 60 1440 < th dose dependent sin 11 NA
507 461.38 humidity 50 4320 > th dose dependent rect. 3 1
512 461.40 humidity 60 720 < th dose independent rect. 17 17
526 461.45 temperature 30 43200 < th dose independent rect. 5 4
527 461.45 temperature 30 43200 < th dose independent rect. 3 6
545 461.54 wind 5 43200 < th dose independent rect. 19 1
546 461.55 temperature 30 43200 < th dose independent rect. 8 1
547 461.55 temperature 30 43200 < th dose independent rect. 1 8
551 461.56 temperature 30 43200 < th dose independent rect. 20 13
559 461.58 wind 1 720 < th dose dependent rect. 2 3
560 461.60 atmosphere 1015 10 < th dose dependent rect. 16 7
564 461.61 wind 7 43200 > th dose dependent rect. 15 1
570 461.64 temperature 25 270 > th dose independent rect. 14 17
589 461.74 temperature 30 90 < th dose independent rect. 3 8
590 461.74 wind 1 90 < th dose independent rect. 4 13
612 461.80 temperature 25 270 > th dose independent rect. 14 19
614 461.82 temperature 25 270 > th dose independent rect. 18 6
616 461.82 wind 9 10 < th dose dependent rect. 4 16
626 461.87 temperature 30 720 > th dose independent rect. 18 1
660 461.94 temperature 20 30 > th dose independent rect. 4 19
681 462.04 temperature 25 30 > th dose independent rect. 22 5
696 462.13 temperature 20 30 > th dose independent rect. 4 16
697 462.13 wind 9 14400 > th dose independent rect. 20 18
698 462.13 atmosphere 1010 10 < th dose independent rect. 6 22
716 462.20 humidity 60 1440 > th dose independent rect. 18 15
718 462.21 humidity 50 10 > th dose independent rect. 10 18
728 462.27 humidity 90 90 > th dose dependent rect. 3 4
753 462.34 temperature 20 30 > th dose independent rect. 16 7
755 462.34 humidity 50 30 > th dose independent rect. 23 17
781 462.42 wind 5 43200 > th dose independent rect. 19 1
788 462.45 wind 1 10 > th dose independent rect. 23 17
796 462.47 wind 9 14400 > th dose dependent rect. 20 18
817 462.54 wind 1 90 < th dose independent rect. 4 19
831 462.58 temperature 15 10 > th dose independent rect. 23 17
835 462.59 atmosphere 1010 10 < th dose independent rect. 9 19
842 462.60 humidity 60 1440 > th dose independent rect. 14 5
883 462.73 humidity 60 1440 > th dose independent rect. 14 15
891 462.76 humidity 60 1440 > th dose independent rect. 14 11
911 462.82 temperature 25 90 < th dose independent rect. 23 4
922 462.85 humidity 60 1440 < th dose independent rect. 14 5
932 462.88 wind 9 43200 > th dose independent rect. 15 1
936 462.89 wind 1 10 < th dose independent rect. 4 14
957 462.93 wind 3 10 < th dose independent rect. 4 19