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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0226500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.72 (0.067) R2 : 0.194
β1 : -1.62 (0.246) R2dD : 0.08 R2D : 0.0684
β2 : 1.15 (0.213) R2dC : 0.0893 R2C : -0.048
β3 : -1.07 (0.17) R2dE : 0.122 R2E : -0.0149
β4 : -2.87 (0.842) R2dD*C : 0.0357 R2D*C : -0.0104
β5 : 2.37 (0.686) R2dD*E : 0.0364 R2D*E : -0.0178
γ1 : -0.409 (0.144) R2dN8 : 0.0195 R2N8 : 0.0115
σ : 1.26
deviance : 719.85
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C
peak time of C : 14
E
wheather : atmosphere
threshold : 1005
memory length : 71
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.1
open length of G : 9.93

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
719.85 1.26 3.72 -1.62 1.15 -1.07 -2.87 2.37 -0.409 14 1005 71 10.1 9.93
738.37 1.27 3.72 -1.59 1.07 -1.01 -1.3 -- -0.412 13.7 1005 59 10.4 9.67
741.35 1.28 3.72 -1.72 0.943 -0.826 -- 0.864 -0.457 12.8 1005 68 10.4 9.62
739.89 1.27 3.73 -1.67 1.02 -0.944 -- -- -0.464 13.1 1005 56 10.3 9.78
772.05 1.29 3.73 -1.64 -- -0.884 -- 0.601 -0.395 -- 1005 620 10.1 10.1
781.69 1.31 3.74 -1.72 0.625 -- 0.264 -- -0.555 9.11 -- -- -- --
781.89 1.31 3.74 -1.71 0.622 -- -- -- -0.554 9.27 -- -- -- --
769.95 1.29 3.73 -1.67 -- -0.895 -- -- -0.426 -- 1005 581 10 11.1
813.65 1.33 3.71 -- 1.13 -1 -- -- -0.311 13 1004 62 10.3 9.55
804.4 1.33 3.76 -1.72 -- -- -- -- -0.552 -- -- -- -- --
859.25 1.37 3.7 -- 0.623 -- -- -- -0.363 9.48 -- -- -- --
846.43 1.36 3.68 -- -- -0.899 -- -- -0.24 -- 1005 680 10.2 9.53
882.06 1.39 3.71 -- -- -- -- -- -0.361 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 727.59 radiation 1 30 > th dose dependent sin 10 NA
2 727.85 atmosphere 1005 90 > th dose independent rect. 10 10
3 730.60 atmosphere 1005 90 < th dose independent rect. 9 13
4 731.35 temperature 25 30 < th dose independent rect. 23 18
5 731.42 atmosphere 1005 10 < th dose independent rect. 9 14
13 731.95 atmosphere 1005 270 > th dose independent rect. 9 8
23 733.34 temperature 25 30 < th dose independent rect. 11 19
32 734.13 atmosphere 1005 270 > th dose independent rect. 9 5
45 735.24 atmosphere 1005 10 < th dose dependent rect. 9 14
51 735.49 temperature 25 30 < th dose independent rect. 19 22
52 735.54 radiation 40 30 < th dose dependent sin 9 NA
55 735.63 atmosphere 1005 90 < th dose dependent rect. 8 14
66 736.22 humidity 70 10 > th dose dependent rect. 23 18
92 737.06 radiation 30 30 < th dose dependent rect. 23 14
108 737.54 temperature 25 30 > th dose independent rect. 13 22
138 737.96 atmosphere 1015 30 < th dose dependent rect. 6 17
139 737.97 wind 3 30 < th dose independent rect. 13 9
180 738.69 atmosphere 1005 720 < th dose independent rect. 9 2
183 738.77 temperature 30 10 < th dose dependent rect. 10 20
185 738.86 temperature 25 30 < th dose independent rect. 22 23
198 739.04 atmosphere 1000 270 > th dose dependent rect. 9 8
226 739.64 temperature 25 30 > th dose independent rect. 6 22
232 739.68 atmosphere 1005 90 < th dose dependent rect. 11 11
235 739.72 humidity 80 10 > th dose independent rect. 23 18
239 739.77 radiation 10 90 > th dose independent sin 10 NA
245 739.84 temperature 25 30 > th dose independent rect. 6 19
253 739.96 temperature 15 10 > th dose dependent rect. 24 23
254 739.97 atmosphere 1005 90 < th dose independent sin 21 NA
266 740.07 temperature 20 10 > th dose dependent rect. 13 23
274 740.14 wind 5 10 < th dose dependent rect. 13 10
283 740.28 radiation 30 30 < th dose dependent rect. 23 17
284 740.29 radiation 10 10 > th dose independent sin 11 NA
296 740.49 temperature 30 10 < th dose dependent rect. 23 18
303 740.53 temperature 15 10 > th dose dependent rect. 6 17
386 741.69 temperature 25 270 > th dose independent rect. 13 20
389 741.76 wind 5 10 < th dose dependent rect. 6 17
391 741.79 temperature 30 10 < th dose dependent rect. 18 23
425 742.19 temperature 20 10 > th dose dependent rect. 6 21
428 742.23 atmosphere 1000 10 > th dose dependent rect. 10 10
444 742.40 humidity 90 10 < th dose dependent rect. 5 5
455 742.55 atmosphere 1005 10 < th dose dependent sin 21 NA
479 742.70 temperature 15 30 > th dose dependent rect. 6 19
506 742.91 radiation 10 10 > th dose independent rect. 15 19
519 743.00 temperature 25 270 > th dose independent rect. 17 15
530 743.08 atmosphere 1005 10 > th dose independent rect. 11 18
540 743.18 temperature 20 90 > th dose dependent rect. 19 15
559 743.33 wind 3 90 < th dose independent rect. 16 6
570 743.46 temperature 25 30 > th dose independent rect. 22 23
576 743.55 wind 3 30 < th dose independent rect. 6 17
608 743.78 temperature 25 270 > th dose independent rect. 15 18
630 744.05 temperature 25 270 > th dose independent rect. 17 7
632 744.06 temperature 25 30 > th dose independent rect. 8 23
664 744.31 temperature 25 270 > th dose independent sin 15 NA
670 744.34 temperature 20 30 > th dose independent rect. 6 17
728 744.70 temperature 25 30 > th dose independent rect. 15 23
751 744.88 temperature 25 30 > th dose independent rect. 3 22
754 744.89 temperature 25 30 > th dose independent rect. 24 23
756 744.89 atmosphere 1010 720 < th dose dependent rect. 6 5
760 744.92 temperature 25 30 > th dose independent no NA NA
775 744.97 temperature 25 30 > th dose independent rect. 19 23
788 745.04 atmosphere 1005 10 < th dose dependent rect. 4 19
830 745.25 atmosphere 1005 90 > th dose independent rect. 10 19
835 745.31 temperature 25 30 < th dose independent rect. 5 23
844 745.39 wind 5 90 < th dose dependent rect. 15 7
854 745.47 temperature 20 10 > th dose dependent rect. 15 23
873 745.60 radiation 1 720 > th dose dependent rect. 18 11
909 745.84 radiation 1 30 > th dose dependent rect. 5 5
950 746.02 temperature 25 30 > th dose independent rect. 17 23
955 746.03 temperature 30 10 < th dose dependent rect. 22 22
956 746.04 temperature 30 10 < th dose dependent rect. 1 23
993 746.22 humidity 80 10 > th dose independent rect. 23 15
997 746.24 temperature 25 30 < th dose independent rect. 3 23