BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0226500 Os06g0226500|AK071601
         (87 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26945.1  | chr1:9351571-9352474 FORWARD LENGTH=95              92   8e-20
AT3G28857.1  | chr3:10855781-10856313 REVERSE LENGTH=93            79   5e-16
AT5G39860.1  | chr5:15957689-15958303 FORWARD LENGTH=93            78   1e-15
AT5G15160.1  | chr5:4921487-4922553 REVERSE LENGTH=95              76   4e-15
AT1G74500.1  | chr1:27998298-27998668 REVERSE LENGTH=94            72   5e-14
AT3G47710.1  | chr3:17590729-17591455 FORWARD LENGTH=93            62   4e-11

>AT1G26945.1 | chr1:9351571-9352474 FORWARD LENGTH=95
          Length = 94

 Score = 91.7 bits (226), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 59/71 (83%)

Query: 16 INELISKLQSLLPSSRRRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDHN 75
          I++L+SKLQ L+P  RRR +++ S +K+L+ETC+YI++LHREVDDLSDRLS+L+A  D N
Sbjct: 22 ISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLASTDDN 81

Query: 76 SPGAEIIRSLL 86
          S  A IIRSLL
Sbjct: 82 SAEAAIIRSLL 92



>AT3G28857.1 | chr3:10855781-10856313 REVERSE LENGTH=93
          Length = 92

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 18 ELISKLQSLLPS-SRRRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDHNS 76
          +L+SKL+  LP    RR +++ S +K+L+ETC+YI+ LHREVD+LSDRLS L+  +D +S
Sbjct: 22 DLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLSQLLDSVDEDS 81

Query: 77 PGAEIIRSLL 86
          P A +IRSLL
Sbjct: 82 PEAAVIRSLL 91



>AT5G39860.1 | chr5:15957689-15958303 FORWARD LENGTH=93
          Length = 92

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 58/70 (82%), Gaps = 1/70 (1%)

Query: 18 ELISKLQSLLPS-SRRRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDHNS 76
          +L+SKL+ +LP   +RR +++AS +K+L+ETC+YI++L+REVD+LS+RLS L+  +D +S
Sbjct: 22 DLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDEDS 81

Query: 77 PGAEIIRSLL 86
          P A +IRSLL
Sbjct: 82 PEAAVIRSLL 91



>AT5G15160.1 | chr5:4921487-4922553 REVERSE LENGTH=95
          Length = 94

 Score = 75.9 bits (185), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 55/72 (76%), Gaps = 1/72 (1%)

Query: 16 INELISKLQSLLPSSRR-RGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDH 74
          I +LISKL+  +P  R+ R +N  S +K+L+ETC+YI++L++E DDLSDRL+ L+  +D 
Sbjct: 21 ITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLESIDP 80

Query: 75 NSPGAEIIRSLL 86
          NSP A +IRSL+
Sbjct: 81 NSPQAAVIRSLI 92



>AT1G74500.1 | chr1:27998298-27998668 REVERSE LENGTH=94
          Length = 93

 Score = 72.0 bits (175), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 55/72 (76%), Gaps = 3/72 (4%)

Query: 16 INELISKLQSLLPSSR-RRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDH 74
          IN+LI KLQ LLP  R  R +++ S  ++L++TC+YI++LHREVDDLS+RLS+L+A  D 
Sbjct: 22 INDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLANSD- 80

Query: 75 NSPGAEIIRSLL 86
           +  A +IRSLL
Sbjct: 81 -TAQAALIRSLL 91



>AT3G47710.1 | chr3:17590729-17591455 FORWARD LENGTH=93
          Length = 92

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 3/72 (4%)

Query: 16 INELISKLQSLLPS-SRRRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDH 74
          IN+L+ +L  LLP  +  R + + S +++L+ETCSYI++L +EVDDLS+RLS L+   D 
Sbjct: 21 INDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLLESTD- 79

Query: 75 NSPGAEIIRSLL 86
           S  A +IRSLL
Sbjct: 80 -SAQAALIRSLL 90



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,367,123
Number of extensions: 40756
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 6
Length of query: 87
Length of database: 11,106,569
Length adjustment: 58
Effective length of query: 29
Effective length of database: 9,516,441
Effective search space: 275976789
Effective search space used: 275976789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)