Os03g0171700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os03g0171700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 274.66 | 0.779 | 3.81 | -5.02 | 0.23 | 42.6 | -1.13 | -249 | -0.107 | 1.12 | 994.6 | 1680 | -- | -- |
| 283.73 | 0.791 | 2.99 | -0.186 | 0.261 | 1.07 | -1.06 | -- | -0.102 | 1.19 | 998.2 | 493 | -- | -- |
| 278.8 | 0.778 | 3.82 | -5.1 | 0.286 | 43.6 | -- | -255 | -0.101 | 3.29 | 994.7 | 1747 | -- | -- |
| 276.93 | 0.775 | 2.99 | -0.191 | 0.275 | 2.36 | -- | -- | -0.0812 | 1.92 | 994.7 | 359 | -- | -- |
| 283.3 | 0.784 | 3.81 | -5.07 | -- | 43.5 | -- | -253 | -0.0953 | -- | 994.7 | 1739 | -- | -- |
| 290.15 | 0.799 | 2.99 | -0.136 | 0.254 | -- | -1.07 | -- | -0.122 | 1.13 | -- | -- | -- | -- |
| 294.53 | 0.804 | 2.99 | -0.0999 | 0.273 | -- | -- | -- | -0.118 | 2.3 | -- | -- | -- | -- |
| 280.92 | 0.781 | 2.98 | -0.12 | -- | 2.42 | -- | -- | -0.088 | -- | 994.7 | 400 | -- | -- |
| 276.9 | 0.775 | 2.98 | -- | 0.293 | 2.55 | -- | -- | -0.0779 | 2.7 | 994.5 | 354 | -- | -- |
| 298.95 | 0.808 | 2.98 | -0.0884 | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
| 294.79 | 0.803 | 2.98 | -- | 0.271 | -- | -- | -- | -0.106 | 2.3 | -- | -- | -- | -- |
| 281.34 | 0.781 | 2.98 | -- | -- | 2.44 | -- | -- | -0.0805 | -- | 994.7 | 412 | -- | -- |
| 299.16 | 0.807 | 2.98 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 268.42 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 5 | 19 |
| 7 | 271.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 10 | 271.45 | atmosphere | 995 | 10 | > th | dose independent | sin | 8 | NA |
| 16 | 271.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 19 | 271.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 25 | 272.20 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 5 | 22 |
| 26 | 272.24 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 17 | 6 |
| 39 | 272.62 | temperature | 20 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 42 | 272.65 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 44 | 272.67 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 7 |
| 45 | 272.70 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 50 | 272.79 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 53 | 272.85 | temperature | 30 | 10 | > th | dose independent | rect. | 18 | 1 |
| 57 | 272.85 | humidity | 90 | 720 | > th | dose independent | rect. | 15 | 4 |
| 77 | 272.90 | wind | 1 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 111 | 272.98 | humidity | 70 | 10 | < th | dose independent | rect. | 18 | 1 |
| 117 | 273.05 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 17 | 6 |
| 118 | 273.06 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 17 | 1 |
| 126 | 273.06 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 139 | 273.23 | wind | 1 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 157 | 273.32 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 7 |
| 165 | 273.42 | humidity | 90 | 720 | > th | dose dependent | rect. | 14 | 6 |
| 172 | 273.53 | humidity | 90 | 720 | > th | dose independent | rect. | 17 | 1 |
| 211 | 273.71 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 2 |
| 228 | 273.74 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 235 | 273.78 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 241 | 273.82 | temperature | 30 | 90 | > th | dose dependent | rect. | 16 | 2 |
| 279 | 273.88 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 281 | 273.88 | temperature | 20 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 300 | 274.02 | radiation | 10 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 316 | 274.06 | temperature | 20 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 318 | 274.07 | wind | 1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 329 | 274.19 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 343 | 274.30 | temperature | 15 | 30 | > th | dose independent | rect. | 4 | 22 |
| 349 | 274.33 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 8 |
| 352 | 274.35 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 366 | 274.36 | atmosphere | 995 | 1440 | > th | dose independent | sin | 23 | NA |
| 385 | 274.44 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 9 |
| 398 | 274.52 | temperature | 10 | 720 | > th | dose dependent | sin | 16 | NA |
| 401 | 274.54 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 1 |
| 422 | 274.58 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 10 | 12 |
| 432 | 274.66 | atmosphere | 995 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 435 | 274.66 | atmosphere | 995 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 447 | 274.73 | atmosphere | 995 | 1440 | > th | dose independent | sin | 4 | NA |
| 466 | 274.74 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 479 | 274.78 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 12 |
| 492 | 274.83 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 13 | 10 |
| 499 | 274.87 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 519 | 274.90 | atmosphere | 995 | 90 | > th | dose independent | rect. | 3 | 23 |
| 527 | 274.93 | wind | 1 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 532 | 274.95 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 2 |
| 554 | 275.03 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 558 | 275.05 | atmosphere | 995 | 720 | > th | dose independent | sin | 12 | NA |
| 576 | 275.07 | temperature | 20 | 270 | < th | dose dependent | rect. | 22 | 6 |
| 578 | 275.07 | temperature | 30 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 607 | 275.21 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 11 | 2 |
| 619 | 275.27 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 1 |
| 628 | 275.30 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 664 | 275.36 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 695 | 275.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 709 | 275.42 | temperature | 15 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 747 | 275.47 | temperature | 15 | 1440 | < th | dose dependent | rect. | 4 | 6 |
| 749 | 275.47 | temperature | 15 | 4320 | < th | dose dependent | rect. | 3 | 18 |
| 770 | 275.51 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 16 |
| 802 | 275.58 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 803 | 275.58 | temperature | 15 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 808 | 275.59 | temperature | 20 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 809 | 275.60 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 881 | 275.72 | temperature | 20 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 888 | 275.73 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 891 | 275.74 | atmosphere | 995 | 1440 | < th | dose dependent | sin | 13 | NA |
| 908 | 275.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 936 | 275.79 | atmosphere | 995 | 1440 | < th | dose dependent | no | NA | NA |