BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0205600 Os06g0205600|Os06g0205600
(745 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0205600 MscS Mechanosensitive ion channel family protein 1142 0.0
Os02g0668000 MscS Mechanosensitive ion channel family protein 443 e-124
Os04g0561000 MscS Mechanosensitive ion channel family protein 438 e-123
AK111174 113 5e-25
AK110237 96 1e-19
>Os06g0205600 MscS Mechanosensitive ion channel family protein
Length = 745
Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/745 (78%), Positives = 583/745 (78%)
Query: 1 MDPPNHAKPAGPANVDLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKPPQNPEK 60
MDPPNHAKPAGPANVDLV EAAKPPQNPEK
Sbjct: 1 MDPPNHAKPAGPANVDLVLLIPPDHPQPQLHPNHHQPQQPPMTPTTPLPEAAKPPQNPEK 60
Query: 61 TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKPKSRFVEXXXXXXXXXXXXXXXXXXXXXX 120
T TKPKSRFVE
Sbjct: 61 TAASSPHAPSSRPPLPPASAALLRRRSSLTKPKSRFVEPAAPPSSAAAAAASSTSSHASP 120
Query: 121 XXXXXXXXXXXXXXXXXXXPAEADDEEEVFPKEVXXXXXXXXXXXMKXXXXXXXXXXXXX 180
PAEADDEEEVFPKEV MK
Sbjct: 121 AHPAAAAGGGSGAASTPHTPAEADDEEEVFPKEVRRKSSARCRRRMKLSVELLVLVLFLA 180
Query: 181 XXXXXXXXRPLKGAGFWGLEIWKWCVMVICVFSGHLVSHWVVTLVVFLVERNFLLRNKVL 240
RPLKGAGFWGLEIWKWCVMVICVFSGHLVSHWVVTLVVFLVERNFLLRNKVL
Sbjct: 181 LLVVSLVVRPLKGAGFWGLEIWKWCVMVICVFSGHLVSHWVVTLVVFLVERNFLLRNKVL 240
Query: 241 YFVFGLKKSVQVCLWIGLVLIAWSQLFDRDVGRSAKTARILNYVSRFLASVLIGSVIWLV 300
YFVFGLKKSVQVCLWIGLVLIAWSQLFDRDVGRSAKTARILNYVSRFLASVLIGSVIWLV
Sbjct: 241 YFVFGLKKSVQVCLWIGLVLIAWSQLFDRDVGRSAKTARILNYVSRFLASVLIGSVIWLV 300
Query: 301 KTFLMKVVASTFHRKAFFDRILENVFDQYVLQTLSGPPVMELAENVGREGSGLGRVSFTK 360
KTFLMKVVASTFHRKAFFDRILENVFDQYVLQTLSGPPVMELAENVGREGSGLGRVSFTK
Sbjct: 301 KTFLMKVVASTFHRKAFFDRILENVFDQYVLQTLSGPPVMELAENVGREGSGLGRVSFTK 360
Query: 361 PKEEKGSPGVIDVMKLRKMSQEKVSAWTMKGLMAAIGSSRLSTISNTIESFDDVDGMEQK 420
PKEEKGSPGVIDVMKLRKMSQEKVSAWTMKGLMAAIGSSRLSTISNTIESFDDVDGMEQK
Sbjct: 361 PKEEKGSPGVIDVMKLRKMSQEKVSAWTMKGLMAAIGSSRLSTISNTIESFDDVDGMEQK 420
Query: 421 DKEINNEWEAKAAASAIFKNVARPGYKHIEEVDLLRFFNKEEVDLVLQRFEGAFETRKIK 480
DKEINNEWEAKAAASAIFKNVARPGYKHIEEVDLLRFFNKEEVDLVLQRFEGAFETRKIK
Sbjct: 421 DKEINNEWEAKAAASAIFKNVARPGYKHIEEVDLLRFFNKEEVDLVLQRFEGAFETRKIK 480
Query: 481 KSALKNWVVKAYLDRKSLAHSLNDTKTAVMQLHNXXXXXXXXXXXXXXXXXMGIATTKXX 540
KSALKNWVVKAYLDRKSLAHSLNDTKTAVMQLHN MGIATTK
Sbjct: 481 KSALKNWVVKAYLDRKSLAHSLNDTKTAVMQLHNLIRVLVIIIIIIITLLLMGIATTKIL 540
Query: 541 XXXXXXXXXXXFIFGNACKTVFEALIFVFIMHPFDVGDRCVIDGIQMVVEEMNILTTIFL 600
FIFGNACKTVFEALIFVFIMHPFDVGDRCVIDGIQMVVEEMNILTTIFL
Sbjct: 541 LVISSQLLVVVFIFGNACKTVFEALIFVFIMHPFDVGDRCVIDGIQMVVEEMNILTTIFL 600
Query: 601 KNDNEKVYYPNSVLSTKAISNFYRSPNMYDTINFTIDVSTSIERIGALKSRIKGYIDSKP 660
KNDNEKVYYPNSVLSTKAISNFYRSPNMYDTINFTIDVSTSIERIGALKSRIKGYIDSKP
Sbjct: 601 KNDNEKVYYPNSVLSTKAISNFYRSPNMYDTINFTIDVSTSIERIGALKSRIKGYIDSKP 660
Query: 661 THWCPIHTVNLKDILDVNKINMSLCVQHTMNFQNIRERNLRRSELVMELKKLFEEMSITY 720
THWCPIHTVNLKDILDVNKINMSLCVQHTMNFQNIRERNLRRSELVMELKKLFEEMSITY
Sbjct: 661 THWCPIHTVNLKDILDVNKINMSLCVQHTMNFQNIRERNLRRSELVMELKKLFEEMSITY 720
Query: 721 HLLPQKVELSFVGPNPIPIALPQSR 745
HLLPQKVELSFVGPNPIPIALPQSR
Sbjct: 721 HLLPQKVELSFVGPNPIPIALPQSR 745
>Os02g0668000 MscS Mechanosensitive ion channel family protein
Length = 974
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/582 (41%), Positives = 356/582 (61%), Gaps = 40/582 (6%)
Query: 189 RPLKGAGFWGLEIWKWCVMVICVFSGHLVSHWVVTLVVFLVERNFLLRNKVLYFVFGLKK 248
+ L G WGL +WKW ++V + G LVS WV+ + VF VERNFLLR +VLYFV+G++
Sbjct: 384 KALSGKKVWGLHLWKWELLVFVLICGRLVSGWVIRIAVFCVERNFLLRKRVLYFVYGVRS 443
Query: 249 SVQVCLWIGLVLIAWSQLFDRDVGRSAKTARILNYVSRFLASVLIGSVIWLVKTFLMKVV 308
+VQ LW+GLVL +W +FD++V R + +L YV + L L+ ++I LVKT L+KV+
Sbjct: 444 AVQNALWLGLVLSSWHFMFDKNVQRETNSP-VLPYVQKILFCFLVATLIRLVKTLLLKVL 502
Query: 309 ASTFHRKAFFDRILENVFDQYVLQTLSGPPVME----LAE--NVGREGS----------- 351
AS+FH +FDRI E +F+Q+V++TLSGPP+++ LAE + R G+
Sbjct: 503 ASSFHVNTYFDRIQEALFNQFVIETLSGPPLVDENQFLAEMHELQRAGATIPAELRSTVP 562
Query: 352 ------------------GLGRVSFTKPKEEKGSPGVIDVMKLRKMSQEKVSAWTMKGLM 393
G G +K K E I + KL K++Q+ +SAW MK LM
Sbjct: 563 TKNLSGQRSIRMSGVIPKGEGSKQLSKEKGEHQIEEGITIDKLHKLNQKNISAWNMKRLM 622
Query: 394 AAIGSSRLSTISNTIESFDDVDGM-EQKDKEINNEWEAKAAASAIFKNVARPGYKHIEEV 452
+ R T++ E G ++ +I +E+EAK AA IF NVA+PG K+I
Sbjct: 623 RIV---RFGTLTTMDEQIQQATGEGDESATQIRSEYEAKIAAKKIFHNVAKPGSKYIYLS 679
Query: 453 DLLRFFNKEEVDLVLQRFEGAFETRKIKKSALKNWVVKAYLDRKSLAHSLNDTKTAVMQL 512
DLLRF +EE + FEGA E ++ K +LKNWVV A+ +RK+LA +LNDTKTAV +L
Sbjct: 680 DLLRFMRQEEAIKTMDLFEGAQEHSRVSKRSLKNWVVNAFRERKALALTLNDTKTAVNKL 739
Query: 513 HNXXXXXXXXXXXXXXXXXMGIATTKXXXXXXXXXXXXXFIFGNACKTVFEALIFVFIMH 572
+ +GIATT F+FGN KT+FEA++F+F+MH
Sbjct: 740 NQMVNVVVGIIVFALWLLILGIATTHFFVFLSSQVLVAVFVFGNTLKTIFEAIVFLFVMH 799
Query: 573 PFDVGDRCVIDGIQMVVEEMNILTTIFLKNDNEKVYYPNSVLSTKAISNFYRSPNMYDTI 632
P+DVGDRC I+ Q+VVEEMNI+TT+FL+ DN K+YYPNSVL+TK I N+YRSP+M + I
Sbjct: 800 PYDVGDRCEIEDCQVVVEEMNIMTTVFLRYDNLKIYYPNSVLATKPIMNYYRSPDMGEGI 859
Query: 633 NFTIDVSTSIERIGALKSRIKGYIDSKPTHWCPIHTVNLKDILDVNKINMSLCVQHTMNF 692
+F++ V+T +E++ +K R+ YID+K HW P + L+D+ D NK+ +S+ ++HT+N+
Sbjct: 860 DFSVHVATPVEKLALMKERLLRYIDNKKDHWYPGAMIVLRDVDDTNKLKVSIWLRHTLNW 919
Query: 693 QNIRERNLRRSELVMELKKLFEEMSITYHLLPQKVELSFVGP 734
Q++ R +RR ++ E+ K+ +++ I Y +LP V + P
Sbjct: 920 QDMGMRFVRRELVLQEMIKVLKDLDIEYRMLPLDVNVRNAPP 961
>Os04g0561000 MscS Mechanosensitive ion channel family protein
Length = 962
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 242/605 (40%), Positives = 357/605 (59%), Gaps = 73/605 (12%)
Query: 189 RPLKGAGFWGLEIWKWCVMVICVFSGHLVSHWVVTLVVFLVERNFLLRNKVLYFVFGLKK 248
R L GL +WKW ++V + G LVS WV+ + VF VERNFLLR KVLYFV+G+++
Sbjct: 339 RSLANKKLSGLHLWKWELLVFVLICGRLVSGWVIRICVFFVERNFLLRKKVLYFVYGVRR 398
Query: 249 SVQVCLWIGLVLIAWSQLFDRDVGRSAKTARILNYVSRFLASVLIGSVIWLVKTFLMKVV 308
+V+ LW+GL LI+W LFD+D R + T +L YV++ L +L+ +VI LVKT L+KV+
Sbjct: 399 AVRNVLWLGLALISWHLLFDKDAKRDSHTL-VLPYVTKVLCCLLVATVIRLVKTLLLKVL 457
Query: 309 ASTFHRKAFFDRILENVFDQYVLQTLSGPPVME----LAENVGREGSGL----------- 353
AS+FH +FDRI + +F+QYV++TLSGPP+++ LAE + +G+
Sbjct: 458 ASSFHVSTYFDRIQDALFNQYVIETLSGPPLVDESRMLAEVQRLQSAGINIPSELEATAM 517
Query: 354 ----------GRVS----------------FTKPKEEKGSPGVIDVMKLRKMSQEKVSAW 387
GR++ K K ++ I + +L ++SQ+ +SAW
Sbjct: 518 PSKPPMPAKSGRLTVNPSKRGGAGGGANKQLQKQKSDRHCDDGITIDQLHRLSQKNISAW 577
Query: 388 TMKGLMAAIGSSRLSTISNTIESFDDVDGMEQKDKEINNEWEAKAAASAIFKNVARPGYK 447
+MK LM + L+T+ I+ G ++ +I++E+EAK AA IF NVA+P K
Sbjct: 578 SMKRLMKIVRYGALTTMDEQIKH---ATGEDELATQIHSEYEAKVAAKRIFHNVAKPHSK 634
Query: 448 HIEEVDLLRFFNKEEVDLVLQRFEGAFETRKIKKSALKNWVVKAYLDRKSLAHSLNDTKT 507
HI DL+RF +EE + FEGA E ++ K +LKNWVV A+ +RK+LA +LNDTKT
Sbjct: 635 HIYLSDLMRFMRQEEALKAMDLFEGAQEHNRVSKRSLKNWVVSAFRERKALALTLNDTKT 694
Query: 508 AVMQLHNXXXXXXXXXXXXXXXXXMGIATTKXXXXXXXXXXXXXFIFGNACKTVFEALIF 567
AV +LH +GIAT++ F+FGN KT+FEA++F
Sbjct: 695 AVNKLHQMANVVVVVIVIALWLSILGIATSRFFVFISSQLLVAVFMFGNTLKTIFEAIVF 754
Query: 568 VFIMHPFDVGDRCVIDG----------------------------IQMVVEEMNILTTIF 599
+F+MHPFDVGDRC +DG IQ+VVEEMNI+TTIF
Sbjct: 755 LFVMHPFDVGDRCEVDGMQVTILFIVLSALYDCFTLSDLVLNCCEIQVVVEEMNIMTTIF 814
Query: 600 LKNDNEKVYYPNSVLSTKAISNFYRSPNMYDTINFTIDVSTSIERIGALKSRIKGYIDSK 659
L+ DN KVYYPNS L+ + I N+YRSP+M D ++F++ V+T +E++ +K R+ Y+D+K
Sbjct: 815 LRYDNLKVYYPNSQLAIQPIMNYYRSPDMGDAVDFSVHVATPVEKLALMKERLMHYLDNK 874
Query: 660 PTHWCPIHTVNLKDILDVNKINMSLCVQHTMNFQNIRERNLRRSELVMELKKLFEEMSIT 719
HW P V L+D+ D NK+ +S+ +HT+NFQ++ R RR L+ E+ K+ +++ I
Sbjct: 875 KEHWYPGSMVVLRDVDDTNKLKVSIWCRHTINFQDMGMRFERRELLLQEMIKILKDLDIE 934
Query: 720 YHLLP 724
Y +LP
Sbjct: 935 YRMLP 939
>AK111174
Length = 896
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 200/451 (44%), Gaps = 30/451 (6%)
Query: 277 TARILNYVSRFLASVLIGSVIWLVKTFLMKVVASTFHRKAFFDRILENVFDQYVLQTLSG 336
T+ I+ R V + + I L + ++ +A FHR ++ DRI + F+ VL TL
Sbjct: 336 TSDIMLSGYRLWFGVCLSAAILLAEKLFIQGIAYNFHRVSYEDRIQTSKFNVKVLTTL-- 393
Query: 337 PPVMELAENVGREGSGLGRVSFTKPKEEKGSPGVIDVMKLRKMSQEKVSAWTMKGLMAAI 396
E ++N+ R+ + ++ + + K + + ++LRK + +A
Sbjct: 394 ---YENSKNLNRKDT---YIAAEQEAKRKSTGLHLARVRLRKTGAKVRD-------VALQ 440
Query: 397 GSSRLSTISNTIESFDDVDGMEQKD---KEINNEWEAKAAASAIFKNVARPGYKHIEEVD 453
+S L T+++ I + + +N+ + +A A I+ + PG + D
Sbjct: 441 STSVLGTVASEIAGQGVLQAGNPRSVVASSLNSRKQTQALARRIWYSFCPPGKSELIVDD 500
Query: 454 LLRFFNKEEVDLVLQRFEGAFE------TRKIKKSALKNWVVKAYLDRKSLAHSLNDTKT 507
++ F D + E AFE I K L+ + + +R +L S+ D +
Sbjct: 501 IIHCFP----DAITA--EAAFEIFDRDLNGDITKDELEAACIGIHRERLALQLSMRDVDS 554
Query: 508 AVMQLHNXXXXXXXXXXXXXXXXXMGIATTKXXXXXXXXXXXXXFIFGNACKTVFEALIF 567
AV +L + + +A + ++ G+ + A+IF
Sbjct: 555 AVGRLDSIFMSVFILISAIIIAAMLSVAFSTLVTSFGTLILGLSWLIGSTAQETLGAIIF 614
Query: 568 VFIMHPFDVGDRCVIDGIQMVVEEMNILTTIFLKNDNEKVYYPNSVLSTKAISNFYRSPN 627
+FI HP+DVGDR + +V+EM +LTT+F + + V +S L+TK I N RS
Sbjct: 615 LFIKHPYDVGDRVDVGEDSYIVKEMRLLTTVFKTTNGKNVMISHSQLATKPIVNLRRSGA 674
Query: 628 MYDTINFTIDVSTSIERIGALKSRIKGYIDSKPTHWCPIHTVNLKDILDVNKINMSLCVQ 687
+ +T F + T+ +I +L++++ +++ + + P +N+ D L+ + +S ++
Sbjct: 675 IEETFKFEVAYGTTFAQIESLRTKMVHWLEGEKRDFLPGLDINVVDFLEQGSMLLSAGIR 734
Query: 688 HTMNFQNIRERNLRRSELVMELKKLFEEMSI 718
+ N+Q + RR+ + +LK E I
Sbjct: 735 YKSNWQQGGLKAQRRNRWLCQLKVFLAECKI 765
>AK110237
Length = 972
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 112/243 (46%), Gaps = 1/243 (0%)
Query: 479 IKKSALKNWVVKAYLDRKSLAHSLNDTKTAVMQLHNXXXXXXXXXXXXXXXXXMGIATTK 538
I +S +KN V++ Y +R+ L S+ D AV QL + K
Sbjct: 619 ISQSEIKNTVMQVYKERRFLGRSMQDVNHAVGQLDGIFLVVALVIIMFEALAIFNVDIGK 678
Query: 539 XXXXXXXXXXXXXFIFGNACKTVFEALIFVFIMHPFDVGDRCVIDGIQMVVEEMNILTTI 598
F+F + VF+++IF+FI HPFD GDR I +VV+ M++L+ +
Sbjct: 679 TLSTFYSLAIAFAFVFKESAANVFDSIIFIFITHPFDTGDRIQIGEAVLVVKRMSLLSCL 738
Query: 599 FLKNDNEKVYYPNSVLSTKAISNFYRSPNMYDTINFTIDVSTSIERIGALKSRIKGYIDS 658
F+ + N+ VY N +L+ +I N RS ++ I D +T ++++ A++ + ++ +
Sbjct: 739 FVDSLNQDVYISNVILAGTSIINMRRSGYQWEAITAQFDFNTPLDKLDAVEEDMIHWLQT 798
Query: 659 KPTH-WCPIHTVNLKDILDVNKINMSLCVQHTMNFQNIRERNLRRSELVMELKKLFEEMS 717
+P + P + + I + + ++ + H +Q+ R R++ ++
Sbjct: 799 EPERLFVPSTAIVPQKIEYMRAMECTIGMTHADTWQDWGRRFYRKNAFFAAFSFYCKKHG 858
Query: 718 ITY 720
I Y
Sbjct: 859 IRY 861
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,586,457
Number of extensions: 616399
Number of successful extensions: 1430
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1420
Number of HSP's successfully gapped: 7
Length of query: 745
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 637
Effective length of database: 11,396,689
Effective search space: 7259690893
Effective search space used: 7259690893
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)