FiT-DB / Search/ Help/ Sample detail

Os04g0561000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MscS Mechanosensitive ion channel family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.36 (0.0348) R2 : 0.855
β1 : 3.07 (0.127) R2dD : 0.192 R2D : 0.196
β2 : 3.2 (0.0854) R2dC : 0.464 R2C : 0.34
β3 : 2.59 (0.101) R2dE : 0.222 R2E : 0.0622
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.995 (0.0742) R2dN8 : 0.0767 R2N8 : 0.0878
σ : 0.65
deviance : 194.54
__
_____
C
peak time of C : 22
E
wheather : radiation
threshold : 0.2304
memory length : 326
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 23.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
177.11 0.625 8.35 2.98 3.19 2.61 -1.21 -2.56 -0.995 22.1 0.2347 314 22.9 --
190.91 0.644 8.36 3.03 3.2 2.59 -0.992 -- -0.998 22.2 0.2398 322 22.8 --
182.18 0.629 8.35 2.93 3.19 2.6 -- -2.4 -0.995 22.1 0.24 316 23.3 --
194.54 0.65 8.36 3.07 3.2 2.59 -- -- -0.995 22 0.2304 326 23.1 --
376.11 0.903 8.36 2.97 -- 2.73 -- -1.81 -1.02 -- 1.02 195 6.1 --
260.31 0.756 8.32 2.91 3.33 -- -1.28 -- -0.976 0.531 -- -- -- --
267.29 0.766 8.31 2.96 3.33 -- -- -- -0.969 0.49 -- -- -- --
267.29 0.761 8.26 2.96 -- 3.3 -- -- -0.971 -- 84.25 74 6.12 --
448.75 0.987 8.37 -- 3.2 2.62 -- -- -0.992 22 0.3207 314 23.6 --
963.02 1.45 8.25 3.07 -- -- -- -- -0.914 -- -- -- -- --
497.64 1.04 8.39 -- 3.37 -- -- -- -1.3 0.534 -- -- -- --
497.64 1.04 8.34 -- -- 3.35 -- -- -1.3 -- 187.9 14 5.58 --
1211.84 1.62 8.33 -- -- -- -- -- -1.25 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 167.27 temperature 20.0 30 > th dose independent rect. 7 8
3 168.61 temperature 20.0 270 > th dose independent rect. 6 7
11 174.07 temperature 30.0 270 < th dose independent rect. 6 7
15 176.86 temperature 30.0 270 < th dose independent rect. 19 16
21 177.92 temperature 10.0 270 > th dose dependent rect. 1 5
27 179.02 temperature 30.0 90 < th dose independent rect. 7 19
28 179.23 radiation 40.0 90 < th dose independent rect. 13 18
29 179.49 precipitation 0.1 270 < th dose independent rect. 5 8
30 179.49 precipitation 0.1 270 < th dose dependent rect. 5 8
31 179.70 wind 9.0 270 < th dose independent rect. 5 8
32 179.81 radiation 10.0 270 < th dose independent rect. 1 5
36 179.89 atmosphere 995.0 270 > th dose independent rect. 5 8
37 179.89 atmosphere 1015.0 270 < th dose independent rect. 5 8
38 179.89 temperature 10.0 270 > th dose independent rect. 13 16
39 179.89 precipitation 0.1 270 < th dose independent rect. 6 19
40 179.89 precipitation 0.1 270 < th dose dependent rect. 6 19
41 179.91 wind 9.0 270 < th dose independent rect. 1 5
42 179.91 temperature 10.0 270 > th dose independent rect. 1 5
44 179.91 temperature 30.0 270 < th dose independent rect. 1 5
45 179.91 humidity 50.0 270 > th dose independent rect. 1 5
48 179.91 atmosphere 995.0 270 > th dose independent rect. 1 5
49 179.91 atmosphere 1015.0 270 < th dose independent rect. 1 5
53 179.91 wind 9.0 270 < th dose independent rect. 13 16
54 179.91 temperature 10.0 270 > th dose independent rect. 6 19
55 179.93 precipitation 0.1 270 < th dose independent rect. 1 5
56 179.93 wind 1.0 30 > th dose independent rect. 7 8
57 179.93 precipitation 0.1 270 < th dose dependent rect. 1 5
58 179.94 radiation 40.0 270 < th dose dependent rect. 1 5
59 179.96 humidity 60.0 270 > th dose independent rect. 6 19
62 180.12 wind 9.0 30 < th dose independent rect. 15 16
66 180.30 atmosphere 995.0 270 > th dose independent rect. 6 19
67 180.31 atmosphere 995.0 270 > th dose dependent rect. 1 5
68 180.38 radiation 40.0 270 < th dose independent rect. 13 16
77 180.77 temperature 10.0 270 > th dose dependent rect. 2 3
78 180.78 temperature 10.0 1440 > th dose independent rect. 8 8
81 180.78 temperature 10.0 1440 > th dose independent rect. 16 16
104 180.96 atmosphere 995.0 30 > th dose independent rect. 7 8
105 180.96 atmosphere 1015.0 30 < th dose independent rect. 7 8
106 180.96 temperature 10.0 30 > th dose independent rect. 15 16
107 180.98 wind 9.0 10 < th dose independent rect. 7 8
111 181.06 precipitation 0.1 30 < th dose independent rect. 7 8
112 181.06 precipitation 0.1 30 < th dose dependent rect. 7 8
116 181.21 radiation 1.0 270 < th dose independent rect. 1 10
117 181.22 wind 9.0 270 < th dose independent rect. 6 19
119 181.26 radiation 1.0 270 < th dose dependent rect. 1 10
143 181.72 humidity 60.0 270 > th dose independent rect. 6 7
149 181.78 radiation 40.0 10 < th dose independent rect. 15 16
159 182.04 radiation 1.0 270 < th dose dependent rect. 2 3
165 182.25 radiation 1.0 270 < th dose dependent sin 5 NA
172 182.51 precipitation 0.1 270 < th dose independent rect. 13 16
173 182.51 precipitation 0.1 270 < th dose dependent rect. 13 16
174 182.55 radiation 1.0 270 < th dose independent rect. 2 3
182 182.67 precipitation 0.1 270 < th dose independent rect. 5 21
183 182.67 atmosphere 995.0 270 > th dose dependent rect. 2 3
184 182.67 precipitation 0.1 270 < th dose dependent rect. 5 21
186 182.71 radiation 1.0 270 < th dose independent sin 5 NA
187 182.74 wind 9.0 270 < th dose independent rect. 2 3
188 182.74 temperature 10.0 270 > th dose independent rect. 2 3
190 182.74 temperature 30.0 270 < th dose independent rect. 2 3
191 182.74 humidity 50.0 270 > th dose independent rect. 2 3
194 182.74 atmosphere 995.0 270 > th dose independent rect. 2 3
195 182.74 atmosphere 1010.0 270 < th dose independent rect. 2 3
200 182.74 temperature 10.0 270 > th dose independent rect. 5 21
213 182.85 precipitation 0.1 270 < th dose independent rect. 2 3
214 182.85 precipitation 0.1 270 < th dose dependent rect. 2 3
240 183.39 wind 9.0 270 < th dose independent rect. 19 16
247 183.57 temperature 10.0 270 > th dose independent rect. 11 8
248 183.57 atmosphere 1015.0 270 < th dose independent rect. 11 8
249 183.57 temperature 10.0 270 > th dose independent rect. 19 16
250 183.57 atmosphere 995.0 270 > th dose independent rect. 19 16
256 183.61 precipitation 0.1 30 < th dose independent rect. 15 16
257 183.61 precipitation 0.1 30 < th dose dependent rect. 15 16
262 183.72 radiation 1.0 270 > th dose independent sin 4 NA
263 183.72 radiation 1.0 30 > th dose independent rect. 7 8
265 183.75 atmosphere 995.0 270 > th dose independent rect. 5 21
274 183.76 radiation 1.0 270 > th dose independent rect. 4 9
286 183.80 wind 9.0 270 < th dose independent rect. 11 8
291 183.83 temperature 10.0 10 > th dose dependent rect. 7 8
292 183.86 humidity 50.0 270 > th dose independent rect. 19 16
301 183.91 precipitation 0.1 270 < th dose independent rect. 11 8
303 183.91 precipitation 0.1 270 < th dose dependent rect. 11 8
309 184.03 wind 9.0 270 < th dose dependent rect. 11 8
316 184.13 wind 1.0 270 > th dose independent rect. 6 18
322 184.23 precipitation 0.1 270 < th dose independent rect. 19 16
324 184.23 precipitation 0.1 270 < th dose dependent rect. 19 16
344 184.69 humidity 50.0 270 > th dose dependent rect. 1 5
347 184.81 wind 1.0 270 > th dose independent rect. 1 5
348 184.82 temperature 10.0 90 > th dose dependent rect. 7 6
354 184.87 wind 9.0 270 < th dose independent rect. 5 21
364 185.08 wind 1.0 90 > th dose independent rect. 7 6
385 185.31 temperature 10.0 30 > th dose dependent rect. 15 16
465 186.09 humidity 50.0 270 > th dose dependent rect. 2 3
470 186.21 humidity 50.0 270 > th dose independent rect. 6 5
484 186.56 radiation 1.0 270 > th dose independent rect. 6 5
492 186.68 radiation 40.0 270 < th dose independent rect. 19 16
551 187.24 radiation 30.0 270 < th dose dependent rect. 16 9
568 187.48 humidity 90.0 90 < th dose independent rect. 7 6
634 187.76 wind 9.0 270 < th dose dependent rect. 1 5
657 187.98 humidity 50.0 270 > th dose independent rect. 17 8
662 188.13 radiation 10.0 270 < th dose independent rect. 17 8
663 188.16 wind 1.0 270 > th dose independent rect. 11 8
676 188.34 radiation 40.0 270 < th dose independent rect. 7 3
681 188.40 wind 1.0 270 > th dose independent rect. 2 3
693 188.54 wind 9.0 90 < th dose dependent rect. 15 16
698 188.58 temperature 10.0 270 > th dose independent rect. 17 8
702 188.58 temperature 10.0 270 > th dose independent rect. 1 16
703 188.58 atmosphere 1015.0 270 < th dose independent rect. 1 16
704 188.59 atmosphere 1015.0 30 < th dose independent rect. 15 16
706 188.62 temperature 10.0 90 > th dose dependent rect. 13 18
707 188.63 radiation 40.0 270 < th dose independent rect. 6 5
708 188.63 precipitation 0.1 270 < th dose independent rect. 17 8
709 188.63 precipitation 0.1 270 < th dose dependent rect. 17 8
742 189.03 wind 9.0 270 < th dose independent rect. 17 8
750 189.11 atmosphere 995.0 270 > th dose independent rect. 17 8
754 189.16 wind 9.0 270 < th dose independent rect. 1 16
764 189.24 temperature 10.0 10 > th dose dependent rect. 2 5
772 189.32 wind 9.0 270 < th dose dependent rect. 2 3
776 189.38 radiation 40.0 90 < th dose dependent rect. 14 17
783 189.45 humidity 90.0 30 < th dose independent rect. 7 8
821 189.74 precipitation 0.1 270 < th dose independent rect. 1 16
822 189.74 precipitation 0.1 270 < th dose dependent rect. 1 16
829 189.85 temperature 30.0 270 < th dose independent rect. 17 8
905 190.74 humidity 70.0 270 > th dose independent rect. 7 3
948 191.01 atmosphere 1015.0 90 < th dose independent rect. 13 18
996 191.60 atmosphere 1015.0 270 < th dose independent rect. 6 18