BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0561000 Os04g0561000|Os04g0561000
(962 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0561000 MscS Mechanosensitive ion channel family protein 1732 0.0
Os02g0668000 MscS Mechanosensitive ion channel family protein 1035 0.0
Os06g0205600 MscS Mechanosensitive ion channel family protein 474 e-133
AK111174 117 3e-26
AK110237 109 9e-24
>Os04g0561000 MscS Mechanosensitive ion channel family protein
Length = 962
Score = 1732 bits (4486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 865/962 (89%), Positives = 865/962 (89%)
Query: 1 MDPRGKGSITSHASDKSSRSGSFDFEXXXXXXXXXXXXXXXXXEVVVKIEPEAHVPVDLH 60
MDPRGKGSITSHASDKSSRSGSFDFE EVVVKIEPEAHVPVDLH
Sbjct: 1 MDPRGKGSITSHASDKSSRSGSFDFEHDQDPDRDRRHDDAHRREVVVKIEPEAHVPVDLH 60
Query: 61 AGGSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESFSFKNRPPQSPASPAMSV 120
AGGSH ESFSFKNRPPQSPASPAMSV
Sbjct: 61 AGGSHAANAPGAGGVAVGGVVPGSGSVSSASSSPGGGGNGESFSFKNRPPQSPASPAMSV 120
Query: 121 GGEGSDDPPTRLIGSFLRKQAAAGGELALDPDLEMEEMRRPPRAPTSMNASRELRVSFQD 180
GGEGSDDPPTRLIGSFLRKQAAAGGELALDPDLEMEEMRRPPRAPTSMNASRELRVSFQD
Sbjct: 121 GGEGSDDPPTRLIGSFLRKQAAAGGELALDPDLEMEEMRRPPRAPTSMNASRELRVSFQD 180
Query: 181 PHKRFXXXXXXXXXXXYAGDSRNQACSTAEAAEVIRCTSMSTGNNLLARSKTRSRLMDPP 240
PHKRF YAGDSRNQACSTAEAAEVIRCTSMSTGNNLLARSKTRSRLMDPP
Sbjct: 181 PHKRFSPSTSSASTSSYAGDSRNQACSTAEAAEVIRCTSMSTGNNLLARSKTRSRLMDPP 240
Query: 241 PPTISHPTEAERNDRKSFVGKGPPKSGQLRXXXXXXXXXXXXXXXXXXXXAFXXXXXXPF 300
PPTISHPTEAERNDRKSFVGKGPPKSGQLR AF PF
Sbjct: 241 PPTISHPTEAERNDRKSFVGKGPPKSGQLRSGLIGKSGLIGLSGPIGKPGAFDDDDDDPF 300
Query: 301 VDEGLAADLKRDTVDCLLILEWVGLIVIMGALVCSLSIRSLANKKLSGLHLWKWELLVFV 360
VDEGLAADLKRDTVDCLLILEWVGLIVIMGALVCSLSIRSLANKKLSGLHLWKWELLVFV
Sbjct: 301 VDEGLAADLKRDTVDCLLILEWVGLIVIMGALVCSLSIRSLANKKLSGLHLWKWELLVFV 360
Query: 361 LICGRLVSGWVIRICVFFVERNFLLRKKVLYFVYGVRRAVRNVLWLGLALISWHLLFDKD 420
LICGRLVSGWVIRICVFFVERNFLLRKKVLYFVYGVRRAVRNVLWLGLALISWHLLFDKD
Sbjct: 361 LICGRLVSGWVIRICVFFVERNFLLRKKVLYFVYGVRRAVRNVLWLGLALISWHLLFDKD 420
Query: 421 AKRDSHTLVLPYVTKVLCCLLVATVIRLVKTLLLKVLASSFHVSTYFDRIQDALFNQYVI 480
AKRDSHTLVLPYVTKVLCCLLVATVIRLVKTLLLKVLASSFHVSTYFDRIQDALFNQYVI
Sbjct: 421 AKRDSHTLVLPYVTKVLCCLLVATVIRLVKTLLLKVLASSFHVSTYFDRIQDALFNQYVI 480
Query: 481 ETLSGPPLVDESRMLAEVQRLQSAGINIPSELEATAMPSKPPMPAKSGRLTVNPSKRGGA 540
ETLSGPPLVDESRMLAEVQRLQSAGINIPSELEATAMPSKPPMPAKSGRLTVNPSKRGGA
Sbjct: 481 ETLSGPPLVDESRMLAEVQRLQSAGINIPSELEATAMPSKPPMPAKSGRLTVNPSKRGGA 540
Query: 541 GGGANKQLQKQKSDRHCDDGITIDQLHRLSQKNISAWSMKRLMKIVRYGALTTMDEQIKH 600
GGGANKQLQKQKSDRHCDDGITIDQLHRLSQKNISAWSMKRLMKIVRYGALTTMDEQIKH
Sbjct: 541 GGGANKQLQKQKSDRHCDDGITIDQLHRLSQKNISAWSMKRLMKIVRYGALTTMDEQIKH 600
Query: 601 ATGEDELATQIHSEYEAKVAAKRIFHNVAKPHSKHIYLSDLMRFMRQEEALKAMDLFEGA 660
ATGEDELATQIHSEYEAKVAAKRIFHNVAKPHSKHIYLSDLMRFMRQEEALKAMDLFEGA
Sbjct: 601 ATGEDELATQIHSEYEAKVAAKRIFHNVAKPHSKHIYLSDLMRFMRQEEALKAMDLFEGA 660
Query: 661 QEHNRVSKRSLKNWVVSAFRERKALALTLNDTKTAVNKLHQMANXXXXXXXXALWLSILG 720
QEHNRVSKRSLKNWVVSAFRERKALALTLNDTKTAVNKLHQMAN ALWLSILG
Sbjct: 661 QEHNRVSKRSLKNWVVSAFRERKALALTLNDTKTAVNKLHQMANVVVVVIVIALWLSILG 720
Query: 721 IATSRFFVFISSQLLVAVFMFGNTLKTIFEAIVFLFVMHPFDVGDRCEVDGMQVTILFIV 780
IATSRFFVFISSQLLVAVFMFGNTLKTIFEAIVFLFVMHPFDVGDRCEVDGMQVTILFIV
Sbjct: 721 IATSRFFVFISSQLLVAVFMFGNTLKTIFEAIVFLFVMHPFDVGDRCEVDGMQVTILFIV 780
Query: 781 LSALYDCFTLSDLVLNCCEIQVVVEEMNIMTTIFLRYDNLKVYYPNSQLAIQPIMNYYRS 840
LSALYDCFTLSDLVLNCCEIQVVVEEMNIMTTIFLRYDNLKVYYPNSQLAIQPIMNYYRS
Sbjct: 781 LSALYDCFTLSDLVLNCCEIQVVVEEMNIMTTIFLRYDNLKVYYPNSQLAIQPIMNYYRS 840
Query: 841 PDMGDAVDFSVHVATPVEKLALMKERLMHYLDNKKEHWYPGSMVVLRDVDDTNKLKVSIW 900
PDMGDAVDFSVHVATPVEKLALMKERLMHYLDNKKEHWYPGSMVVLRDVDDTNKLKVSIW
Sbjct: 841 PDMGDAVDFSVHVATPVEKLALMKERLMHYLDNKKEHWYPGSMVVLRDVDDTNKLKVSIW 900
Query: 901 CRHTINFQDMGMRFERRELLLQEMIKILKDLDIEYRMLPLDINVRNAPMIQSLRMPSTWI 960
CRHTINFQDMGMRFERRELLLQEMIKILKDLDIEYRMLPLDINVRNAPMIQSLRMPSTWI
Sbjct: 901 CRHTINFQDMGMRFERRELLLQEMIKILKDLDIEYRMLPLDINVRNAPMIQSLRMPSTWI 960
Query: 961 TY 962
TY
Sbjct: 961 TY 962
>Os02g0668000 MscS Mechanosensitive ion channel family protein
Length = 974
Score = 1035 bits (2677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/879 (63%), Positives = 656/879 (74%), Gaps = 69/879 (7%)
Query: 101 ESFSFKNRPPQSPA-----------SPAMSVGG-EGSDDPPTRLIGSFLRKQAAAGGELA 148
E+FSFKNR P P+ PA + G +G +DPPTRLIG+FLRKQ A+G EL+
Sbjct: 142 EAFSFKNRAPPRPSSSQASSPSLSPQPAHAAGAVDGGEDPPTRLIGNFLRKQKASGAELS 201
Query: 149 LDPDLEMEEMRRPPR---APTSMNA-SRELRVSFQDPHKRFXXXXXXXXXXXYAGDSRNQ 204
LD L+MEE+ RP + P+ N+ RE RVSFQ P +R G SR +
Sbjct: 202 LD--LDMEELGRPSQLHAQPSFSNSLEREARVSFQ-PKRRVASSSDSDS---DTGGSRRR 255
Query: 205 ACSTAEAAEVIRCTSMSTGNNLLARSKTRSRLMDPPPPTISHPTEAERND--RKSFVGKG 262
+ EV+RCTS ST L R+KTRSRLMDPPP D R+S V +
Sbjct: 256 G---GDDGEVVRCTSSSTAAGHLMRAKTRSRLMDPPPQPQPASAVPPVGDEERRSSVLRT 312
Query: 263 PPKSGQLRXXXXXXXXXXXXXXXXXXXXAFXXXXXXPFVDEGLAADLKRDTVDCLLILEW 322
P KSGQ PF+DE + + KR +D + IL+W
Sbjct: 313 PTKSGQF-----ISGLMTGKSGQIAKSGPLEEEEEDPFMDEDIPDEFKRGKLDAITILQW 367
Query: 323 VGLIVIMGALVCSLSIRSLANKKLSGLHLWKWELLVFVLICGRLVSGWVIRICVFFVERN 382
+ L++I+ AL CSL+I++L+ KK+ GLHLWKWELLVFVLICGRLVSGWVIRI VF VERN
Sbjct: 368 LSLVLIIAALACSLTIKALSGKKVWGLHLWKWELLVFVLICGRLVSGWVIRIAVFCVERN 427
Query: 383 FLLRKKVLYFVYGVRRAVRNVLWLGLALISWHLLFDKDAKRDSHTLVLPYVTKVLCCLLV 442
FLLRK+VLYFVYGVR AV+N LWLGL L SWH +FDK+ +R++++ VLPYV K+L C LV
Sbjct: 428 FLLRKRVLYFVYGVRSAVQNALWLGLVLSSWHFMFDKNVQRETNSPVLPYVQKILFCFLV 487
Query: 443 ATVIRLVKTLLLKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLVDESRMLAEVQRLQ 502
AT+IRLVKTLLLKVLASSFHV+TYFDRIQ+ALFNQ+VIETLSGPPLVDE++ LAE+ LQ
Sbjct: 488 ATLIRLVKTLLLKVLASSFHVNTYFDRIQEALFNQFVIETLSGPPLVDENQFLAEMHELQ 547
Query: 503 SAGINIPSELEATAMPSKPPMPAKSGRLT-VNPSKRGGAGGGANKQLQKQKSDRHCDDGI 561
AG IP+EL +T +P+K +S R++ V P G +KQL K+K + ++GI
Sbjct: 548 RAGATIPAELRST-VPTKNLSGQRSIRMSGVIPKGEG------SKQLSKEKGEHQIEEGI 600
Query: 562 TIDQLHRLSQKNISAWSMKRLMKIVRYGALTTMDEQIKHATGE-DELATQIHSEYEAKVA 620
TID+LH+L+QKNISAW+MKRLM+IVR+G LTTMDEQI+ ATGE DE ATQI SEYEAK+A
Sbjct: 601 TIDKLHKLNQKNISAWNMKRLMRIVRFGTLTTMDEQIQQATGEGDESATQIRSEYEAKIA 660
Query: 621 AKRIFHNVAKPHSKHIYLSDLMRFMRQEEALKAMDLFEGAQEHNRVSKRSLKNWVVSAFR 680
AK+IFHNVAKP SK+IYLSDL+RFMRQEEA+K MDLFEGAQEH+RVSKRSLKNWVV+AFR
Sbjct: 661 AKKIFHNVAKPGSKYIYLSDLLRFMRQEEAIKTMDLFEGAQEHSRVSKRSLKNWVVNAFR 720
Query: 681 ERKALALTLNDTKTAVNKLHQMANXXXXXXXXALWLSILGIATSRFFVFISSQLLVAVFM 740
ERKALALTLNDTKTAVNKL+QM N ALWL ILGIAT+ FFVF+SSQ+LVAVF+
Sbjct: 721 ERKALALTLNDTKTAVNKLNQMVNVVVGIIVFALWLLILGIATTHFFVFLSSQVLVAVFV 780
Query: 741 FGNTLKTIFEAIVFLFVMHPFDVGDRCEVDGMQVTILFIVLSALYDCFTLSDLVLNCCEI 800
FGNTLKTIFEAIVFLFVMHP+DVGDRCE++ DC
Sbjct: 781 FGNTLKTIFEAIVFLFVMHPYDVGDRCEIE---------------DC------------- 812
Query: 801 QVVVEEMNIMTTIFLRYDNLKVYYPNSQLAIQPIMNYYRSPDMGDAVDFSVHVATPVEKL 860
QVVVEEMNIMTT+FLRYDNLK+YYPNS LA +PIMNYYRSPDMG+ +DFSVHVATPVEKL
Sbjct: 813 QVVVEEMNIMTTVFLRYDNLKIYYPNSVLATKPIMNYYRSPDMGEGIDFSVHVATPVEKL 872
Query: 861 ALMKERLMHYLDNKKEHWYPGSMVVLRDVDDTNKLKVSIWCRHTINFQDMGMRFERRELL 920
ALMKERL+ Y+DNKK+HWYPG+M+VLRDVDDTNKLKVSIW RHT+N+QDMGMRF RREL+
Sbjct: 873 ALMKERLLRYIDNKKDHWYPGAMIVLRDVDDTNKLKVSIWLRHTLNWQDMGMRFVRRELV 932
Query: 921 LQEMIKILKDLDIEYRMLPLDINVRNAPMIQSLRMPSTW 959
LQEMIK+LKDLDIEYRMLPLD+NVRNAP IQS RMP+TW
Sbjct: 933 LQEMIKVLKDLDIEYRMLPLDVNVRNAPPIQSTRMPTTW 971
>Os06g0205600 MscS Mechanosensitive ion channel family protein
Length = 745
Score = 474 bits (1219), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/610 (41%), Positives = 372/610 (60%), Gaps = 73/610 (11%)
Query: 339 RSLANKKLSGLHLWKWELLVFVLICGRLVSGWVIRICVFFVERNFLLRKKVLYFVYGVRR 398
R L GL +WKW ++V + G LVS WV+ + VF VERNFLLR KVLYFV+G+++
Sbjct: 189 RPLKGAGFWGLEIWKWCVMVICVFSGHLVSHWVVTLVVFLVERNFLLRNKVLYFVFGLKK 248
Query: 399 AVRNVLWLGLALISWHLLFDKDAKRDSHTL-VLPYVTKVLCCLLVATVIRLVKTLLLKVL 457
+V+ LW+GL LI+W LFD+D R + T +L YV++ L +L+ +VI LVKT L+KV+
Sbjct: 249 SVQVCLWIGLVLIAWSQLFDRDVGRSAKTARILNYVSRFLASVLIGSVIWLVKTFLMKVV 308
Query: 458 ASSFHVSTYFDRIQDALFNQYVIETLSGPPLVDESRMLAEVQRLQSAGINIPSELEATAM 517
AS+FH +FDRI + +F+QYV++TLSGPP+++ LAE + +G+
Sbjct: 309 ASTFHRKAFFDRILENVFDQYVLQTLSGPPVME----LAENVGREGSGL----------- 353
Query: 518 PSKPPMPAKSGRLTVNPSKRGGAGGGANKQLQKQKSDRHCDDGITIDQLHRLSQKNISAW 577
GR++ K K ++ I + +L ++SQ+ +SAW
Sbjct: 354 ----------GRVS----------------FTKPKEEKGSPGVIDVMKLRKMSQEKVSAW 387
Query: 578 SMKRLMKIVRYGALTTMDEQIKH---ATGEDELATQIHSEYEAKVAAKRIFHNVAKPHSK 634
+MK LM + L+T+ I+ G ++ +I++E+EAK AA IF NVA+P K
Sbjct: 388 TMKGLMAAIGSSRLSTISNTIESFDDVDGMEQKDKEINNEWEAKAAASAIFKNVARPGYK 447
Query: 635 HIYLSDLMRFMRQEEALKAMDLFEGAQEHNRVSKRSLKNWVVSAFRERKALALTLNDTKT 694
HI DL+RF +EE + FEGA E ++ K +LKNWVV A+ +RK+LA +LNDTKT
Sbjct: 448 HIEEVDLLRFFNKEEVDLVLQRFEGAFETRKIKKSALKNWVVKAYLDRKSLAHSLNDTKT 507
Query: 695 AVNKLHQMANXXXXXXXXALWLSILGIATSRFFVFISSQLLVAVFMFGNTLKTIFEAIVF 754
AV +LH + + L ++GIAT++ + ISSQLLV VF+FGN KT+FEA++F
Sbjct: 508 AVMQLHNLIRVLVIIIIIIITLLLMGIATTKILLVISSQLLVVVFIFGNACKTVFEALIF 567
Query: 755 LFVMHPFDVGDRCEVDGMQVTILFIVLSALYDCFTLSDLVLNCCEIQVVVEEMNIMTTIF 814
+F+MHPFDVGDRC +DG IQ+VVEEMNI+TTIF
Sbjct: 568 VFIMHPFDVGDRCVIDG----------------------------IQMVVEEMNILTTIF 599
Query: 815 LRYDNLKVYYPNSQLAIQPIMNYYRSPDMGDAVDFSVHVATPVEKLALMKERLMHYLDNK 874
L+ DN KVYYPNS L+ + I N+YRSP+M D ++F++ V+T +E++ +K R+ Y+D+K
Sbjct: 600 LKNDNEKVYYPNSVLSTKAISNFYRSPNMYDTINFTIDVSTSIERIGALKSRIKGYIDSK 659
Query: 875 KEHWYPGSMVVLRDVDDTNKLKVSIWCRHTINFQDMGMRFERRELLLQEMIKILKDLDIE 934
HW P V L+D+ D NK+ +S+ +HT+NFQ++ R RR L+ E+ K+ +++ I
Sbjct: 660 PTHWCPIHTVNLKDILDVNKINMSLCVQHTMNFQNIRERNLRRSELVMELKKLFEEMSIT 719
Query: 935 YRMLPLDINV 944
Y +LP + +
Sbjct: 720 YHLLPQKVEL 729
>AK111174
Length = 896
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 154/328 (46%), Gaps = 30/328 (9%)
Query: 607 LATQIHSEYEAKVAAKRIFHNVAKPHSKHIYLSDLMR-FMRQEEALKAMDLFEGAQEHNR 665
+A+ ++S + + A+RI+++ P + + D++ F A A ++F+ +
Sbjct: 467 VASSLNSRKQTQALARRIWYSFCPPGKSELIVDDIIHCFPDAITAEAAFEIFD-RDLNGD 525
Query: 666 VSKRSLKNWVVSAFRERKALALTLNDTKTAVNKLHQMANXXXXXXXXALWLSILGIATSR 725
++K L+ + RER AL L++ D +AV +L + + ++L +A S
Sbjct: 526 ITKDELEAACIGIHRERLALQLSMRDVDSAVGRLDSIFMSVFILISAIIIAAMLSVAFST 585
Query: 726 FFVFISSQLLVAVFMFGNTLKTIFEAIVFLFVMHPFDVGDRCEVDGMQVTILFIVLSALY 785
+ +L ++ G+T + AI+FLF+ HP+DVGDR +V
Sbjct: 586 LVTSFGTLILGLSWLIGSTAQETLGAIIFLFIKHPYDVGDRVDVG--------------- 630
Query: 786 DCFTLSDLVLNCCEIQVVVEEMNIMTTIFLRYDNLKVYYPNSQLAIQPIMNYYRSPDMGD 845
E +V+EM ++TT+F + V +SQLA +PI+N RS + +
Sbjct: 631 -------------EDSYIVKEMRLLTTVFKTTNGKNVMISHSQLATKPIVNLRRSGAIEE 677
Query: 846 AVDFSVHVATPVEKLALMKERLMHYLDNKKEHWYPGSMVVLRDVDDTNKLKVSIWCRHTI 905
F V T ++ ++ +++H+L+ +K + PG + + D + + +S R+
Sbjct: 678 TFKFEVAYGTTFAQIESLRTKMVHWLEGEKRDFLPGLDINVVDFLEQGSMLLSAGIRYKS 737
Query: 906 NFQDMGMRFERRELLLQEMIKILKDLDI 933
N+Q G++ +RR L ++ L + I
Sbjct: 738 NWQQGGLKAQRRNRWLCQLKVFLAECKI 765
>AK110237
Length = 972
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 121/564 (21%), Positives = 221/564 (39%), Gaps = 67/564 (11%)
Query: 405 WLGLALI--SWHLLFDKDAKRDSHTLVLPYVTKVLCCLLVATVIRLVKTLLLKVLASSFH 462
W A+I S + L++ R S L + +++ T+ + +++K +A SFH
Sbjct: 332 WGSWAIIFNSVYGLYNHTHPRQSRAAYLYRIYQIIEFFFFFTLTICAEKVIIKHIAMSFH 391
Query: 463 VSTYFDRIQDALFNQYVIETLSGPPLVDESRMLAEVQRLQSAGINIPSELEATAMP-SKP 521
S Y DRI + V + L D L + + GI + S + ++ +
Sbjct: 392 KSAYADRIAKVTKSLKVFDWLR-----DHKPKLKGRETGSAFGIPMRSARGSPSVSGANT 446
Query: 522 PMPAKSGRLTV-NPSKRGGAGGGANKQLQKQKSDRHCDDGITIDQLHRL----------- 569
PM L N + R + +K R D + R
Sbjct: 447 PMTPNDFVLDGDNTNSRNASSSSKGTWFEKHSKKRPSDQAAYAGENDRAIDPATGKPAEG 506
Query: 570 -------SQKNISAWSMKRLMKIVRYGA-------LTTMDEQIKHATGED-ELATQIHSE 614
+ NI A + R +R A M++ E + T ++S
Sbjct: 507 QAPARGSGKSNIFARTAARSRHRIRATAGQASTLARVAMNDPFGLLRNEALGIGTDVNSP 566
Query: 615 YEAKVAAKRIFHNVAKPHSK-HIYLSDL-MRFMRQEEALKAMDLFEGAQEHNRVSKRSLK 672
EAK A+ IF H + ++ SD + ++A A +F+ + +S+ +K
Sbjct: 567 AEAKRLARSIFIAFRGSHKRSYLVPSDFDSAYTNPQDARDAFSVFD-RDGNGDISQSEIK 625
Query: 673 NWVVSAFRERKALALTLNDTKTAVNKLHQMANXXXXXXXXALWLSILGIATSRFFVFISS 732
N V+ ++ER+ L ++ D AV +L + L+I + + S
Sbjct: 626 NTVMQVYKERRFLGRSMQDVNHAVGQLDGIFLVVALVIIMFEALAIFNVDIGKTLSTFYS 685
Query: 733 QLLVAVFMFGNTLKTIFEAIVFLFVMHPFDVGDRCEVDGMQVTILFIVLSALYDCFTLSD 792
+ F+F + +F++I+F+F+ HPFD GDR ++
Sbjct: 686 LAIAFAFVFKESAANVFDSIIFIFITHPFDTGDRIQI----------------------- 722
Query: 793 LVLNCCEIQVVVEEMNIMTTIFLRYDNLKVYYPNSQLAIQPIMNYYRSPDMGDAVDFSVH 852
E +VV+ M++++ +F+ N VY N LA I+N RS +A+
Sbjct: 723 -----GEAVLVVKRMSLLSCLFVDSLNQDVYISNVILAGTSIINMRRSGYQWEAITAQFD 777
Query: 853 VATPVEKLALMKERLMHYLDNKKEHWY-PGSMVVLRDVDDTNKLKVSIWCRHTINFQDMG 911
TP++KL ++E ++H+L + E + P + +V + ++ ++ +I H +QD G
Sbjct: 778 FNTPLDKLDAVEEDMIHWLQTEPERLFVPSTAIVPQKIEYMRAMECTIGMTHADTWQDWG 837
Query: 912 MRFERRELLLQEMIKILKDLDIEY 935
RF R+ K I Y
Sbjct: 838 RRFYRKNAFFAAFSFYCKKHGIRY 861
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,170,906
Number of extensions: 1212859
Number of successful extensions: 4279
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 4264
Number of HSP's successfully gapped: 7
Length of query: 962
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 852
Effective length of database: 11,292,261
Effective search space: 9621006372
Effective search space used: 9621006372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 161 (66.6 bits)