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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0205600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MscS Mechanosensitive ion channel family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.18 (0.0192) R2 : 0.631
β1 : 1.27 (0.0702) R2dD : 0.274 R2D : 0.2
β2 : 1.01 (0.0492) R2dC : 0.341 R2C : 0.331
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.338 (0.0409) R2dN8 : 0.0737 R2N8 : 0.0118
σ : 0.361
deviance : 59.3
__
_____
C
peak time of C : 7.66
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.38 0.313 9.22 1.08 1.01 -0.643 0.365 0.679 0.143 7.76 23.21 1429 -- --
45.22 0.313 9.21 1.16 1.01 -0.63 0.357 -- 0.178 7.83 22.79 1407 -- --
44.51 0.311 9.22 1.08 1.06 -0.667 -- 0.676 0.151 8.04 32.25 1347 -- --
45.28 0.313 9.21 1.16 1.1 -0.647 -- -- 0.186 8.08 80 1318 -- --
92.44 0.448 9.27 1.05 -- -1.15 -- 0.46 0.0856 -- 5.285 1501 -- --
58.92 0.36 9.18 1.26 1.01 -- 0.377 -- 0.338 7.6 -- -- -- --
59.3 0.361 9.18 1.27 1.01 -- -- -- 0.338 7.66 -- -- -- --
92.74 0.449 9.25 1.12 -- -1.21 -- -- 0.152 -- 4.44 1504 -- --
80.77 0.419 9.25 -- 1.12 -0.789 -- -- 0.0253 8.13 53.78 1308 -- --
113.8 0.498 9.2 1.28 -- -- -- -- 0.353 -- -- -- -- --
101.81 0.472 9.21 -- 1.02 -- -- -- 0.196 7.57 -- -- -- --
123.31 0.517 9.28 -- -- -1.61 -- -- 0.017 -- 3.165 1490 -- --
157.26 0.585 9.23 -- -- -- -- -- 0.21 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.09 humidity 90 14400 < th dose independent rect. 21 6
3 43.19 humidity 90 14400 > th dose independent rect. 21 6
16 43.82 radiation 20 1440 > th dose independent rect. 16 21
18 43.87 radiation 10 1440 > th dose independent sin 7 NA
21 43.93 wind 1 43200 < th dose dependent rect. 2 2
23 43.95 radiation 10 1440 > th dose independent rect. 6 6
24 43.95 radiation 1 14400 < th dose independent rect. 18 11
69 44.03 wind 1 43200 > th dose independent rect. 2 2
74 44.12 wind 9 43200 > th dose independent rect. 16 1
82 44.19 radiation 30 1440 < th dose dependent rect. 15 22
85 44.23 wind 1 43200 < th dose independent rect. 2 2
91 44.25 radiation 20 1440 < th dose dependent rect. 11 23
93 44.29 radiation 1 14400 < th dose independent rect. 18 3
99 44.30 radiation 30 1440 < th dose dependent sin 4 NA
105 44.32 radiation 1 14400 < th dose independent rect. 18 1
119 44.36 radiation 20 1440 < th dose dependent rect. 5 12
124 44.37 radiation 20 1440 < th dose dependent rect. 2 15
146 44.43 humidity 80 43200 > th dose dependent rect. 11 2
152 44.43 radiation 20 1440 < th dose dependent rect. 5 23
156 44.44 radiation 20 1440 < th dose dependent rect. 5 19
165 44.45 radiation 20 1440 < th dose dependent no NA NA
178 44.45 radiation 20 1440 < th dose dependent rect. 2 21
240 44.49 radiation 40 1440 < th dose dependent rect. 6 7
262 44.50 radiation 1 1440 > th dose dependent sin 5 NA
263 44.50 radiation 1 1440 > th dose dependent rect. 6 7
268 44.51 radiation 40 1440 < th dose dependent rect. 2 11
271 44.51 radiation 40 1440 < th dose dependent rect. 23 14
298 44.54 radiation 1 1440 > th dose dependent rect. 16 21
452 44.61 humidity 80 43200 > th dose independent rect. 12 1
454 44.61 humidity 80 14400 > th dose dependent rect. 22 1
497 44.65 radiation 1 1440 > th dose dependent rect. 11 23
498 44.66 humidity 90 14400 < th dose independent sin 12 NA
503 44.66 radiation 1 1440 > th dose dependent rect. 14 20
596 44.71 radiation 1 14400 < th dose dependent rect. 23 6
794 44.77 radiation 20 1440 < th dose independent rect. 11 23
808 44.78 radiation 1 14400 < th dose dependent rect. 19 10
856 44.81 radiation 1 1440 > th dose dependent no NA NA
980 44.90 wind 1 43200 < th dose dependent rect. 1 5
986 44.91 radiation 1 14400 > th dose independent rect. 18 1