BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0203600 Os06g0203600|AK121461
         (428 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0203600  Conserved hypothetical protein                      889   0.0  
Os02g0778500  Conserved hypothetical protein                      567   e-162
Os07g0571600  Conserved hypothetical protein                      128   8e-30

>Os06g0203600 Conserved hypothetical protein
          Length = 428

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/428 (100%), Positives = 428/428 (100%)

Query: 1   MKADRLMLSNLDHDLGYLHKFPSDFPMSHDLGLSLFTHAGTMVGSSLRQHRQICSSGNLI 60
           MKADRLMLSNLDHDLGYLHKFPSDFPMSHDLGLSLFTHAGTMVGSSLRQHRQICSSGNLI
Sbjct: 1   MKADRLMLSNLDHDLGYLHKFPSDFPMSHDLGLSLFTHAGTMVGSSLRQHRQICSSGNLI 60

Query: 61  VQEAFDRLNKFARAFCYWLSRVSNPKNLRRLMSMEGPSSGACQSHINHLSSRMQNLAVLQ 120
           VQEAFDRLNKFARAFCYWLSRVSNPKNLRRLMSMEGPSSGACQSHINHLSSRMQNLAVLQ
Sbjct: 61  VQEAFDRLNKFARAFCYWLSRVSNPKNLRRLMSMEGPSSGACQSHINHLSSRMQNLAVLQ 120

Query: 121 FGYLVREEHAVQLLLANFASTTLGRLWNDFQQQHACNVLTLAGAMAIVPPLENISLKTLA 180
           FGYLVREEHAVQLLLANFASTTLGRLWNDFQQQHACNVLTLAGAMAIVPPLENISLKTLA
Sbjct: 121 FGYLVREEHAVQLLLANFASTTLGRLWNDFQQQHACNVLTLAGAMAIVPPLENISLKTLA 180

Query: 181 ESMALGNIKDYVSRPMDKPYLEDKCIKSRSVAVPSTIFQGDAIEPKTGIKFPAFLEDDSS 240
           ESMALGNIKDYVSRPMDKPYLEDKCIKSRSVAVPSTIFQGDAIEPKTGIKFPAFLEDDSS
Sbjct: 181 ESMALGNIKDYVSRPMDKPYLEDKCIKSRSVAVPSTIFQGDAIEPKTGIKFPAFLEDDSS 240

Query: 241 PSTTVLVGMGFKGVKVMRVKNLDLYAFGLYLQPNTISEKLGPKYASVPTINLKDNPDFYD 300
           PSTTVLVGMGFKGVKVMRVKNLDLYAFGLYLQPNTISEKLGPKYASVPTINLKDNPDFYD
Sbjct: 241 PSTTVLVGMGFKGVKVMRVKNLDLYAFGLYLQPNTISEKLGPKYASVPTINLKDNPDFYD 300

Query: 301 DLLRENLPMRVRLVLHYNGLSIGAVRDVFEKSLGLRLQKMNPNTDYHCLKTFGSYFNEDI 360
           DLLRENLPMRVRLVLHYNGLSIGAVRDVFEKSLGLRLQKMNPNTDYHCLKTFGSYFNEDI
Sbjct: 301 DLLRENLPMRVRLVLHYNGLSIGAVRDVFEKSLGLRLQKMNPNTDYHCLKTFGSYFNEDI 360

Query: 361 PIPAGTKIDFCQTSDGQLITEIDGRQIGAVKSKDLCRALFGMYIGDSPVSLQAKKDIAQN 420
           PIPAGTKIDFCQTSDGQLITEIDGRQIGAVKSKDLCRALFGMYIGDSPVSLQAKKDIAQN
Sbjct: 361 PIPAGTKIDFCQTSDGQLITEIDGRQIGAVKSKDLCRALFGMYIGDSPVSLQAKKDIAQN 420

Query: 421 VAGLIGKC 428
           VAGLIGKC
Sbjct: 421 VAGLIGKC 428



>Os02g0778500 Conserved hypothetical protein
          Length = 427

 Score =  567 bits (1462), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/428 (64%), Positives = 328/428 (76%), Gaps = 2/428 (0%)

Query: 1   MKADRLMLSNLDHDLGYLHKFPSDFPMSHDLGLSLFTHAGTMVGSSLRQHRQICSSGNLI 60
           MK D  + S  DH+ GYLHKFP D P+SHD+GL L +H GT+V SS +  R ICS+GN  
Sbjct: 1   MKPDWSIFSKFDHNGGYLHKFPIDSPISHDIGLGLISHFGTLVESSFQHPRHICSTGNGA 60

Query: 61  VQEAFDRLNKFARAFCYWLSRVSNPKNLRRLMSMEGPSSGACQSHINHLSSRMQNLAVLQ 120
           VQEAF   NKFA AF +WLSR SNPK   RL ++ G SS ACQS I  ++S MQ+LA L+
Sbjct: 61  VQEAFSCFNKFAGAFYFWLSRASNPKIFHRLSAIAGSSSRACQSQIKQVTSCMQHLAGLR 120

Query: 121 FGYLVREEHAVQLLLANFASTTLGRLWNDFQQQHACNVLTLAGAMAIVPPLENISLKTLA 180
           FG  VREEHA+Q+LLA  A+ T GRLWN+ +++HACN+L LA A   VPP ENIS K LA
Sbjct: 121 FGSQVREEHAIQILLAKLANATFGRLWNEVEERHACNILMLAAAT--VPPFENISPKMLA 178

Query: 181 ESMALGNIKDYVSRPMDKPYLEDKCIKSRSVAVPSTIFQGDAIEPKTGIKFPAFLEDDSS 240
           +SM LG        P+D+  LE+       VAVP  I   DA EPKTGIKFP  LED+S+
Sbjct: 179 DSMTLGRDNGRTREPVDQHSLEENHSGCTCVAVPRIILPEDATEPKTGIKFPTLLEDNSN 238

Query: 241 PSTTVLVGMGFKGVKVMRVKNLDLYAFGLYLQPNTISEKLGPKYASVPTINLKDNPDFYD 300
           P++ VLVGMGF+ +++MRVKNL+LYAFGLY+QP++I ++L PKYASVP   LKD+PDFY+
Sbjct: 239 PTSEVLVGMGFRSMRIMRVKNLNLYAFGLYIQPDSICKRLSPKYASVPVSELKDHPDFYE 298

Query: 301 DLLRENLPMRVRLVLHYNGLSIGAVRDVFEKSLGLRLQKMNPNTDYHCLKTFGSYFNEDI 360
           DLLREN+ M VRL++ YNGLSIG VRD FEKSL  RLQKMNPNTDYHCLKTFGSYF+EDI
Sbjct: 299 DLLRENIHMTVRLIVSYNGLSIGTVRDAFEKSLCFRLQKMNPNTDYHCLKTFGSYFSEDI 358

Query: 361 PIPAGTKIDFCQTSDGQLITEIDGRQIGAVKSKDLCRALFGMYIGDSPVSLQAKKDIAQN 420
            IPAGTKIDF QTSDGQLITEIDG+QIGAV+SKDLCRA F MYIGD PVS++ K+DIAQN
Sbjct: 359 CIPAGTKIDFRQTSDGQLITEIDGKQIGAVQSKDLCRAFFDMYIGDPPVSVETKQDIAQN 418

Query: 421 VAGLIGKC 428
           V GLI +C
Sbjct: 419 VGGLIRRC 426



>Os07g0571600 Conserved hypothetical protein
          Length = 263

 Score =  128 bits (322), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 115/198 (58%), Gaps = 6/198 (3%)

Query: 228 GIKFPAFLEDDSSPSTTVLVGMGFKGVKVMRVKNLDLYAFGLYLQPNTISEKLGPKYASV 287
           G  FPA      +     L+G+G +   ++ +K++D+YAFG+Y   + +  +L  KY  +
Sbjct: 70  GAAFPA-----ETSGGRRLLGVGLRRTTILGLKSIDVYAFGVYADDHDL-RQLREKYQKL 123

Query: 288 PTINLKDNPDFYDDLLRENLPMRVRLVLHYNGLSIGAVRDVFEKSLGLRLQKMNPNTDYH 347
           P   LK+N +  +D L  ++ M VRL + Y  LSI +VR  FEKS+G RL K   +  + 
Sbjct: 124 PVSQLKENAELINDALERDIRMTVRLQIVYGRLSIRSVRSAFEKSVGSRLLKFGGSDTHE 183

Query: 348 CLKTFGSYFNEDIPIPAGTKIDFCQTSDGQLITEIDGRQIGAVKSKDLCRALFGMYIGDS 407
            L++F S F ++  +P G+ I+  + S   L   I+G ++G+++SK LC+++  +YIGD 
Sbjct: 184 LLQSFVSLFKDEYKLPKGSVIELSRESSHVLKISIEGEELGSIQSKLLCKSILDLYIGDD 243

Query: 408 PVSLQAKKDIAQNVAGLI 425
           P    AK+ + +N+A ++
Sbjct: 244 PFDKNAKESVQENMASIL 261



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,050,953
Number of extensions: 569015
Number of successful extensions: 1012
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1009
Number of HSP's successfully gapped: 3
Length of query: 428
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 324
Effective length of database: 11,605,545
Effective search space: 3760196580
Effective search space used: 3760196580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)