Os06g0203600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0203600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.4 | 0.636 | 8.97 | -2.2 | 0.451 | -0.854 | -1.53 | 2.21 | -0.965 | 10 | 81.95 | 686 | -- | -- |
| 191.28 | 0.644 | 8.96 | -2.07 | 0.382 | -0.714 | -0.92 | -- | -0.969 | 11 | 83 | 644 | -- | -- |
| 186.9 | 0.637 | 8.95 | -2.14 | 0.425 | -0.803 | -- | 1.51 | -0.955 | 7.81 | 82.02 | 507 | -- | -- |
| 192.8 | 0.647 | 8.97 | -2.03 | 0.413 | -0.797 | -- | -- | -0.955 | 8.9 | 83.49 | 574 | -- | -- |
| 187.3 | 0.637 | 8.96 | -2.11 | -- | -0.43 | -- | 1.67 | -0.931 | -- | 83.25 | 313 | -- | -- |
| 206.91 | 0.674 | 8.97 | -2.06 | 0.238 | -- | -0.975 | -- | -0.912 | 15.1 | -- | -- | -- | -- |
| 209.78 | 0.678 | 8.97 | -2.08 | 0.25 | -- | -- | -- | -0.917 | 16.1 | -- | -- | -- | -- |
| 198.2 | 0.656 | 8.97 | -2.04 | -- | -0.518 | -- | -- | -0.941 | -- | 83.58 | 508 | -- | -- |
| 300.16 | 0.807 | 8.92 | -- | 0.417 | -0.847 | -- | -- | -0.756 | 8.46 | 84.02 | 510 | -- | -- |
| 213.16 | 0.682 | 8.97 | -2.09 | -- | -- | -- | -- | -0.924 | -- | -- | -- | -- | -- |
| 323.65 | 0.842 | 8.92 | -- | 0.29 | -- | -- | -- | -0.686 | 16 | -- | -- | -- | -- |
| 300.36 | 0.807 | 8.98 | -- | -- | -1.02 | -- | -- | -0.895 | -- | 91 | 1566 | -- | -- |
| 328.24 | 0.846 | 8.92 | -- | -- | -- | -- | -- | -0.692 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.63 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 180.63 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 3 | 181.12 | humidity | 80.0 | 720 | > th | dose dependent | sin | 23 | NA |
| 4 | 181.36 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 3 | 17 |
| 9 | 181.51 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 18 | 181.85 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 8 | 13 |
| 35 | 182.41 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 67 | 182.96 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 8 | 9 |
| 68 | 182.97 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 70 | 183.00 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 22 |
| 71 | 183.06 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 8 | 22 |
| 77 | 183.15 | humidity | 80.0 | 720 | > th | dose independent | rect. | 9 | 6 |
| 92 | 183.35 | humidity | 80.0 | 720 | > th | dose independent | rect. | 2 | 18 |
| 98 | 183.39 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 105 | 183.46 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 127 | 183.71 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 128 | 183.72 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 132 | 183.75 | humidity | 80.0 | 720 | > th | dose independent | sin | 0 | NA |
| 148 | 183.86 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 149 | 183.86 | humidity | 80.0 | 720 | > th | dose independent | rect. | 18 | 22 |
| 157 | 183.89 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 13 |
| 165 | 183.94 | humidity | 80.0 | 720 | > th | dose independent | rect. | 23 | 22 |
| 170 | 183.96 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 171 | 183.96 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 194 | 184.10 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 210 | 184.10 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 227 | 184.12 | humidity | 80.0 | 720 | > th | dose independent | rect. | 2 | 22 |
| 250 | 184.24 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 251 | 184.24 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 255 | 184.27 | humidity | 80.0 | 720 | > th | dose independent | rect. | 8 | 16 |
| 256 | 184.27 | humidity | 70.0 | 720 | > th | dose dependent | no | NA | NA |
| 264 | 184.30 | humidity | 80.0 | 720 | < th | dose independent | rect. | 9 | 22 |
| 286 | 184.42 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 7 |
| 289 | 184.45 | humidity | 80.0 | 720 | < th | dose independent | rect. | 9 | 8 |
| 320 | 184.57 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 323 | 184.58 | humidity | 90.0 | 720 | < th | dose independent | rect. | 5 | 17 |
| 327 | 184.59 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 336 | 184.64 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 357 | 184.74 | humidity | 80.0 | 720 | > th | dose independent | no | NA | NA |
| 372 | 184.78 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 381 | 184.84 | humidity | 90.0 | 720 | < th | dose independent | rect. | 3 | 19 |
| 388 | 184.87 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 6 |
| 397 | 184.93 | temperature | 25.0 | 720 | < th | dose dependent | sin | 22 | NA |
| 400 | 184.96 | humidity | 80.0 | 720 | < th | dose independent | rect. | 9 | 12 |
| 411 | 184.99 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 7 |
| 432 | 185.09 | humidity | 80.0 | 720 | < th | dose independent | rect. | 20 | 22 |
| 437 | 185.11 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 439 | 185.12 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 465 | 185.20 | humidity | 80.0 | 720 | < th | dose independent | sin | 23 | NA |
| 508 | 185.33 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 514 | 185.35 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 515 | 185.35 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 532 | 185.38 | humidity | 80.0 | 720 | < th | dose independent | rect. | 23 | 22 |
| 535 | 185.39 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 560 | 185.46 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 563 | 185.47 | temperature | 15.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 567 | 185.48 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 591 | 185.54 | humidity | 80.0 | 720 | > th | dose independent | rect. | 23 | 18 |
| 646 | 185.67 | temperature | 20.0 | 720 | < th | dose independent | rect. | 8 | 11 |
| 658 | 185.69 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 23 |
| 664 | 185.71 | temperature | 20.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 666 | 185.71 | humidity | 80.0 | 720 | < th | dose independent | no | NA | NA |
| 692 | 185.77 | humidity | 80.0 | 720 | < th | dose independent | rect. | 5 | 23 |
| 706 | 185.80 | temperature | 20.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 717 | 185.82 | humidity | 80.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 734 | 185.84 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 20 | 22 |
| 735 | 185.85 | radiation | 1.0 | 720 | < th | dose independent | rect. | 10 | 5 |
| 783 | 185.93 | humidity | 80.0 | 720 | < th | dose independent | rect. | 14 | 23 |
| 856 | 186.10 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 881 | 186.13 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 938 | 186.24 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 953 | 186.27 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 961 | 186.31 | radiation | 1.0 | 720 | < th | dose independent | rect. | 13 | 1 |
| 964 | 186.31 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 13 | 1 |