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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0778500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.23 (0.0382) R2 : 0.676
β1 : -3.66 (0.142) R2dD : 0.53 R2D : 0.244
β2 : 1.32 (0.0964) R2dC : 0.137 R2C : 0.0571
β3 : -1.96 (0.166) R2dE : 0.12 R2E : -0.14
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.44 (0.0866) R2dN8 : 0.312 R2N8 : -0.0191
σ : 0.702
deviance : 224.37
__
_____
C
peak time of C : 7.33
E
wheather : temperature
threshold : 25.5
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209.14 0.679 6.27 -3.96 1.32 -1.73 -1.38 2.26 -1.5 7.62 25.5 10 -- --
217.52 0.692 6.23 -3.59 1.31 -1.84 -1.65 -- -1.42 7.73 25.5 10 -- --
213.86 0.686 6.27 -4.03 1.32 -1.78 -- 2.42 -1.52 7.45 25.5 10 -- --
224.37 0.702 6.23 -3.66 1.32 -1.96 -- -- -1.44 7.33 25.5 10 -- --
303.77 0.816 6.29 -3.96 -- -2 -- 2.1 -1.43 -- 24.11 10 -- --
269.53 0.77 6.14 -3.14 1.36 -- -1.97 -- -1.03 8.78 -- -- -- --
282.15 0.787 6.14 -3.21 1.37 -- -- -- -1.03 8.56 -- -- -- --
310.04 0.824 6.25 -3.68 -- -2.29 -- -- -1.35 -- 23.5 6 -- --
546.32 1.09 6.08 -- 1.32 -0.729 -- -- -0.75 8.48 22.68 7 -- --
388.1 0.921 6.17 -3.2 -- -- -- -- -1.02 -- -- -- -- --
553.03 1.1 6.06 -- 1.36 -- -- -- -0.677 8.73 -- -- -- --
641.04 1.18 6.12 -- -- -1.07 -- -- -0.784 -- 23.15 3 -- --
658.36 1.2 6.09 -- -- -- -- -- -0.667 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 196.47 humidity 50 14400 < th dose dependent rect. 16 19
2 198.68 humidity 50 14400 > th dose independent rect. 17 17
3 199.80 humidity 60 14400 < th dose dependent rect. 17 16
4 201.61 humidity 50 14400 > th dose independent rect. 16 19
5 203.29 humidity 50 14400 < th dose independent rect. 16 19
6 204.94 wind 7 43200 > th dose dependent rect. 20 1
8 205.53 humidity 60 14400 < th dose dependent rect. 17 3
21 205.67 humidity 50 14400 < th dose dependent rect. 16 1
24 205.87 wind 9 43200 > th dose independent rect. 20 1
25 205.92 wind 7 43200 < th dose independent rect. 20 1
50 207.88 temperature 10 720 > th dose dependent rect. 10 14
52 208.18 wind 9 43200 > th dose dependent rect. 17 5
54 208.53 wind 9 43200 > th dose dependent rect. 16 13
57 208.71 humidity 60 14400 > th dose independent rect. 18 3
64 208.88 temperature 10 720 > th dose dependent rect. 12 10
65 208.95 humidity 60 14400 > th dose independent rect. 18 11
66 208.99 wind 7 43200 < th dose independent rect. 18 3
69 209.17 temperature 25 10 < th dose dependent rect. 13 23
71 209.21 humidity 60 14400 < th dose independent rect. 18 2
85 209.30 temperature 25 10 < th dose dependent rect. 1 23
90 209.47 temperature 25 10 < th dose dependent rect. 5 23
92 209.52 temperature 25 10 < th dose dependent rect. 17 23
105 209.61 temperature 25 10 < th dose dependent rect. 15 23
106 209.62 temperature 25 10 < th dose dependent no NA NA
110 209.79 temperature 25 10 < th dose dependent rect. 11 23
111 209.82 temperature 25 10 < th dose dependent rect. 19 23
112 209.85 temperature 25 10 < th dose dependent rect. 9 23
113 209.87 temperature 25 10 < th dose dependent rect. 7 23
117 209.98 wind 9 43200 > th dose dependent rect. 16 8
119 210.03 wind 7 43200 > th dose independent rect. 18 3
121 210.06 temperature 25 10 < th dose dependent rect. 23 23
124 210.13 temperature 25 10 < th dose dependent rect. 3 23
130 210.36 temperature 25 10 < th dose dependent rect. 21 23
160 211.29 wind 9 43200 > th dose independent rect. 17 12
185 211.78 wind 9 43200 < th dose independent rect. 17 11
199 212.53 temperature 10 720 > th dose dependent sin 19 NA
200 212.56 wind 9 43200 > th dose dependent rect. 17 2
215 212.95 wind 9 43200 > th dose independent rect. 17 7
230 213.30 wind 9 43200 < th dose independent rect. 17 7
246 213.78 temperature 30 10 < th dose dependent sin 16 NA
253 213.91 radiation 20 4320 > th dose dependent rect. 16 15
379 215.08 temperature 30 720 < th dose dependent rect. 9 14
380 215.09 temperature 10 1440 > th dose dependent rect. 11 1
404 215.39 temperature 10 10 > th dose dependent no NA NA
424 215.70 radiation 20 4320 > th dose dependent rect. 16 1
438 215.71 temperature 30 720 < th dose dependent rect. 17 2
478 216.16 temperature 30 720 < th dose dependent sin 19 NA
555 216.85 temperature 10 10 > th dose dependent sin 13 NA
586 217.21 temperature 30 720 < th dose dependent rect. 10 11
617 217.51 humidity 50 14400 < th dose independent sin 11 NA
635 217.68 temperature 10 10 > th dose dependent sin 17 NA
656 217.86 temperature 10 1440 > th dose dependent rect. 10 7
658 217.87 wind 9 43200 > th dose independent rect. 20 8
694 218.08 wind 9 43200 < th dose independent rect. 20 8
699 218.14 wind 9 43200 > th dose dependent sin 14 NA
715 218.21 temperature 30 720 < th dose dependent rect. 15 5
739 218.31 wind 9 43200 > th dose dependent rect. 20 9
756 218.46 temperature 15 10 > th dose dependent rect. 3 23
768 218.56 humidity 60 1440 > th dose dependent rect. 11 1
837 218.98 temperature 15 90 > th dose dependent rect. 3 23
860 219.12 humidity 80 1440 > th dose dependent rect. 10 2
861 219.14 wind 7 43200 < th dose independent rect. 15 18
863 219.15 wind 9 43200 > th dose independent sin 13 NA
882 219.23 wind 9 43200 < th dose independent sin 12 NA
885 219.23 wind 5 43200 > th dose dependent sin 13 NA
900 219.33 radiation 1 43200 < th dose dependent rect. 21 6
909 219.37 wind 5 43200 > th dose independent rect. 16 15
915 219.40 wind 5 43200 < th dose independent rect. 16 16
922 219.46 temperature 30 720 < th dose dependent rect. 13 8
934 219.54 atmosphere 995 43200 < th dose dependent rect. 15 10
942 219.58 wind 5 43200 < th dose independent rect. 16 13
953 219.61 wind 9 43200 > th dose dependent rect. 20 6
961 219.64 wind 1 43200 > th dose independent rect. 8 2
968 219.66 temperature 15 270 > th dose dependent rect. 10 23
987 219.77 temperature 10 1440 > th dose dependent rect. 15 3