BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0778500 Os02g0778500|AK107205
(427 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0778500 Conserved hypothetical protein 894 0.0
Os06g0203600 Conserved hypothetical protein 567 e-162
Os07g0571600 Conserved hypothetical protein 138 8e-33
>Os02g0778500 Conserved hypothetical protein
Length = 427
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/427 (100%), Positives = 427/427 (100%)
Query: 1 MKPDWSIFSKFDHNGGYLHKFPIDSPISHDIGLGLISHFGTLVESSFQHPRHICSTGNGA 60
MKPDWSIFSKFDHNGGYLHKFPIDSPISHDIGLGLISHFGTLVESSFQHPRHICSTGNGA
Sbjct: 1 MKPDWSIFSKFDHNGGYLHKFPIDSPISHDIGLGLISHFGTLVESSFQHPRHICSTGNGA 60
Query: 61 VQEAFSCFNKFAGAFYFWLSRASNPKIFHRLSAIAGSSSRACQSQIKQVTSCMQHLAGLR 120
VQEAFSCFNKFAGAFYFWLSRASNPKIFHRLSAIAGSSSRACQSQIKQVTSCMQHLAGLR
Sbjct: 61 VQEAFSCFNKFAGAFYFWLSRASNPKIFHRLSAIAGSSSRACQSQIKQVTSCMQHLAGLR 120
Query: 121 FGSQVREEHAIQILLAKLANATFGRLWNEVEERHACNILMLAAATVPPFENISPKMLADS 180
FGSQVREEHAIQILLAKLANATFGRLWNEVEERHACNILMLAAATVPPFENISPKMLADS
Sbjct: 121 FGSQVREEHAIQILLAKLANATFGRLWNEVEERHACNILMLAAATVPPFENISPKMLADS 180
Query: 181 MTLGRDNGRTREPVDQHSLEENHSGCTCVAVPRIILPEDATEPKTGIKFPTLLEDNSNPT 240
MTLGRDNGRTREPVDQHSLEENHSGCTCVAVPRIILPEDATEPKTGIKFPTLLEDNSNPT
Sbjct: 181 MTLGRDNGRTREPVDQHSLEENHSGCTCVAVPRIILPEDATEPKTGIKFPTLLEDNSNPT 240
Query: 241 SEVLVGMGFRSMRIMRVKNLNLYAFGLYIQPDSICKRLSPKYASVPVSELKDHPDFYEDL 300
SEVLVGMGFRSMRIMRVKNLNLYAFGLYIQPDSICKRLSPKYASVPVSELKDHPDFYEDL
Sbjct: 241 SEVLVGMGFRSMRIMRVKNLNLYAFGLYIQPDSICKRLSPKYASVPVSELKDHPDFYEDL 300
Query: 301 LRENIHMTVRLIVSYNGLSIGTVRDAFEKSLCFRLQKMNPNTDYHCLKTFGSYFSEDICI 360
LRENIHMTVRLIVSYNGLSIGTVRDAFEKSLCFRLQKMNPNTDYHCLKTFGSYFSEDICI
Sbjct: 301 LRENIHMTVRLIVSYNGLSIGTVRDAFEKSLCFRLQKMNPNTDYHCLKTFGSYFSEDICI 360
Query: 361 PAGTKIDFRQTSDGQLITEIDGKQIGAVQSKDLCRAFFDMYIGDPPVSVETKQDIAQNVG 420
PAGTKIDFRQTSDGQLITEIDGKQIGAVQSKDLCRAFFDMYIGDPPVSVETKQDIAQNVG
Sbjct: 361 PAGTKIDFRQTSDGQLITEIDGKQIGAVQSKDLCRAFFDMYIGDPPVSVETKQDIAQNVG 420
Query: 421 GLIRRCY 427
GLIRRCY
Sbjct: 421 GLIRRCY 427
>Os06g0203600 Conserved hypothetical protein
Length = 428
Score = 567 bits (1462), Expect = e-162, Method: Compositional matrix adjust.
Identities = 275/428 (64%), Positives = 328/428 (76%), Gaps = 2/428 (0%)
Query: 1 MKPDWSIFSKFDHNGGYLHKFPIDSPISHDIGLGLISHFGTLVESSFQHPRHICSTGNGA 60
MK D + S DH+ GYLHKFP D P+SHD+GL L +H GT+V SS + R ICS+GN
Sbjct: 1 MKADRLMLSNLDHDLGYLHKFPSDFPMSHDLGLSLFTHAGTMVGSSLRQHRQICSSGNLI 60
Query: 61 VQEAFSCFNKFAGAFYFWLSRASNPKIFHRLSAIAGSSSRACQSQIKQVTSCMQHLAGLR 120
VQEAF NKFA AF +WLSR SNPK RL ++ G SS ACQS I ++S MQ+LA L+
Sbjct: 61 VQEAFDRLNKFARAFCYWLSRVSNPKNLRRLMSMEGPSSGACQSHINHLSSRMQNLAVLQ 120
Query: 121 FGSQVREEHAIQILLAKLANATFGRLWNEVEERHACNILMLAAAT--VPPFENISPKMLA 178
FG VREEHA+Q+LLA A+ T GRLWN+ +++HACN+L LA A VPP ENIS K LA
Sbjct: 121 FGYLVREEHAVQLLLANFASTTLGRLWNDFQQQHACNVLTLAGAMAIVPPLENISLKTLA 180
Query: 179 DSMTLGRDNGRTREPVDQHSLEENHSGCTCVAVPRIILPEDATEPKTGIKFPTLLEDNSN 238
+SM LG P+D+ LE+ VAVP I DA EPKTGIKFP LED+S+
Sbjct: 181 ESMALGNIKDYVSRPMDKPYLEDKCIKSRSVAVPSTIFQGDAIEPKTGIKFPAFLEDDSS 240
Query: 239 PTSEVLVGMGFRSMRIMRVKNLNLYAFGLYIQPDSICKRLSPKYASVPVSELKDHPDFYE 298
P++ VLVGMGF+ +++MRVKNL+LYAFGLY+QP++I ++L PKYASVP LKD+PDFY+
Sbjct: 241 PSTTVLVGMGFKGVKVMRVKNLDLYAFGLYLQPNTISEKLGPKYASVPTINLKDNPDFYD 300
Query: 299 DLLRENIHMTVRLIVSYNGLSIGTVRDAFEKSLCFRLQKMNPNTDYHCLKTFGSYFSEDI 358
DLLREN+ M VRL++ YNGLSIG VRD FEKSL RLQKMNPNTDYHCLKTFGSYF+EDI
Sbjct: 301 DLLRENLPMRVRLVLHYNGLSIGAVRDVFEKSLGLRLQKMNPNTDYHCLKTFGSYFNEDI 360
Query: 359 CIPAGTKIDFRQTSDGQLITEIDGKQIGAVQSKDLCRAFFDMYIGDPPVSVETKQDIAQN 418
IPAGTKIDF QTSDGQLITEIDG+QIGAV+SKDLCRA F MYIGD PVS++ K+DIAQN
Sbjct: 361 PIPAGTKIDFCQTSDGQLITEIDGRQIGAVKSKDLCRALFGMYIGDSPVSLQAKKDIAQN 420
Query: 419 VGGLIRRC 426
V GLI +C
Sbjct: 421 VAGLIGKC 428
>Os07g0571600 Conserved hypothetical protein
Length = 263
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 113/181 (62%), Gaps = 1/181 (0%)
Query: 244 LVGMGFRSMRIMRVKNLNLYAFGLYIQPDSICKRLSPKYASVPVSELKDHPDFYEDLLRE 303
L+G+G R I+ +K++++YAFG+Y D ++L KY +PVS+LK++ + D L
Sbjct: 83 LLGVGLRRTTILGLKSIDVYAFGVYAD-DHDLRQLREKYQKLPVSQLKENAELINDALER 141
Query: 304 NIHMTVRLIVSYNGLSIGTVRDAFEKSLCFRLQKMNPNTDYHCLKTFGSYFSEDICIPAG 363
+I MTVRL + Y LSI +VR AFEKS+ RL K + + L++F S F ++ +P G
Sbjct: 142 DIRMTVRLQIVYGRLSIRSVRSAFEKSVGSRLLKFGGSDTHELLQSFVSLFKDEYKLPKG 201
Query: 364 TKIDFRQTSDGQLITEIDGKQIGAVQSKDLCRAFFDMYIGDPPVSVETKQDIAQNVGGLI 423
+ I+ + S L I+G+++G++QSK LC++ D+YIGD P K+ + +N+ ++
Sbjct: 202 SVIELSRESSHVLKISIEGEELGSIQSKLLCKSILDLYIGDDPFDKNAKESVQENMASIL 261
Query: 424 R 424
+
Sbjct: 262 K 262
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,092,024
Number of extensions: 626136
Number of successful extensions: 1114
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1111
Number of HSP's successfully gapped: 3
Length of query: 427
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 323
Effective length of database: 11,605,545
Effective search space: 3748591035
Effective search space used: 3748591035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)