BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0199200 Os06g0199200|AK066664
(531 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0199200 Ataxin-2, C-terminal domain containing protein 1027 0.0
AK065642 1027 0.0
Os03g0180300 Ataxin-2, C-terminal domain containing protein 169 4e-42
AK111229 88 1e-17
Os04g0442100 Smr protein/MutS2 C-terminal domain containing... 71 2e-12
>Os06g0199200 Ataxin-2, C-terminal domain containing protein
Length = 531
Score = 1027 bits (2656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/531 (93%), Positives = 497/531 (93%)
Query: 1 MTSLNKVVSNGDTRSMLPNKVTALNPNAAEFVPSCIRPSFESSAVSDVSKADLRASGKTI 60
MTSLNKVVSNGDTRSMLPNKVTALNPNAAEFVPSCIRPSFESSAVSDVSKADLRASGKTI
Sbjct: 1 MTSLNKVVSNGDTRSMLPNKVTALNPNAAEFVPSCIRPSFESSAVSDVSKADLRASGKTI 60
Query: 61 LDRXXXXXXXXXXXXAHQFWRKQLPDDIIPDFSFEKIEQEPEELSLAGLSLNAPPFYGTT 120
LDR AHQFWRKQLPDDIIPDFSFEKIEQEPEELSLAGLSLNAPPFYGTT
Sbjct: 61 LDRSESSKSNNSDDEAHQFWRKQLPDDIIPDFSFEKIEQEPEELSLAGLSLNAPPFYGTT 120
Query: 121 ASRFSREHDLSSQANKSLELGLTSLLYEDNSQASFPTMGSSNWEQNFVGDLHFTNGNQGL 180
ASRFSREHDLSSQANKSLELGLTSLLYEDNSQASFPTMGSSNWEQNFVGDLHFTNGNQGL
Sbjct: 121 ASRFSREHDLSSQANKSLELGLTSLLYEDNSQASFPTMGSSNWEQNFVGDLHFTNGNQGL 180
Query: 181 HYXXXXXXXXXXXXXXXXXXXXXXVLDPLAYLASQFPDFSSESLAELYYANGCDFNHTIE 240
HY VLDPLAYLASQFPDFSSESLAELYYANGCDFNHTIE
Sbjct: 181 HYDSESAAGFSDSFASDYAAATDDVLDPLAYLASQFPDFSSESLAELYYANGCDFNHTIE 240
Query: 241 ILTQLEMQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSV 300
ILTQLEMQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSV
Sbjct: 241 ILTQLEMQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSV 300
Query: 301 STGTGDFVSAVRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSS 360
STGTGDFVSAVRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSS
Sbjct: 301 STGTGDFVSAVRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSS 360
Query: 361 ARAAPWLETGDAVANMYSESRGEARDFARIRNACFEQARQAYLIGNKALAKELSMKGQTY 420
ARAAPWLETGDAVANMYSESRGEARDFARIRNACFEQARQAYLIGNKALAKELSMKGQTY
Sbjct: 361 ARAAPWLETGDAVANMYSESRGEARDFARIRNACFEQARQAYLIGNKALAKELSMKGQTY 420
Query: 421 NTQMKASHEKAREAIYRQRNPSSQRGSDRLIDLHGLHVNEAIHILKVELGTLKSTARATG 480
NTQMKASHEKAREAIYRQRNPSSQRGSDRLIDLHGLHVNEAIHILKVELGTLKSTARATG
Sbjct: 421 NTQMKASHEKAREAIYRQRNPSSQRGSDRLIDLHGLHVNEAIHILKVELGTLKSTARATG 480
Query: 481 ERMQVMICVGTGHHTKGSRTARLPIAVEQFLLEEGLHYTQAQPGLLRVVVF 531
ERMQVMICVGTGHHTKGSRTARLPIAVEQFLLEEGLHYTQAQPGLLRVVVF
Sbjct: 481 ERMQVMICVGTGHHTKGSRTARLPIAVEQFLLEEGLHYTQAQPGLLRVVVF 531
>AK065642
Length = 531
Score = 1027 bits (2656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/531 (93%), Positives = 497/531 (93%)
Query: 1 MTSLNKVVSNGDTRSMLPNKVTALNPNAAEFVPSCIRPSFESSAVSDVSKADLRASGKTI 60
MTSLNKVVSNGDTRSMLPNKVTALNPNAAEFVPSCIRPSFESSAVSDVSKADLRASGKTI
Sbjct: 1 MTSLNKVVSNGDTRSMLPNKVTALNPNAAEFVPSCIRPSFESSAVSDVSKADLRASGKTI 60
Query: 61 LDRXXXXXXXXXXXXAHQFWRKQLPDDIIPDFSFEKIEQEPEELSLAGLSLNAPPFYGTT 120
LDR AHQFWRKQLPDDIIPDFSFEKIEQEPEELSLAGLSLNAPPFYGTT
Sbjct: 61 LDRSESSKSNNSDDEAHQFWRKQLPDDIIPDFSFEKIEQEPEELSLAGLSLNAPPFYGTT 120
Query: 121 ASRFSREHDLSSQANKSLELGLTSLLYEDNSQASFPTMGSSNWEQNFVGDLHFTNGNQGL 180
ASRFSREHDLSSQANKSLELGLTSLLYEDNSQASFPTMGSSNWEQNFVGDLHFTNGNQGL
Sbjct: 121 ASRFSREHDLSSQANKSLELGLTSLLYEDNSQASFPTMGSSNWEQNFVGDLHFTNGNQGL 180
Query: 181 HYXXXXXXXXXXXXXXXXXXXXXXVLDPLAYLASQFPDFSSESLAELYYANGCDFNHTIE 240
HY VLDPLAYLASQFPDFSSESLAELYYANGCDFNHTIE
Sbjct: 181 HYDSESAAGFSDSFASDYAAATDDVLDPLAYLASQFPDFSSESLAELYYANGCDFNHTIE 240
Query: 241 ILTQLEMQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSV 300
ILTQLEMQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSV
Sbjct: 241 ILTQLEMQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGFSKGNADILSIFNGRSSPSV 300
Query: 301 STGTGDFVSAVRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSS 360
STGTGDFVSAVRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSS
Sbjct: 301 STGTGDFVSAVRKLASQNSGHWKYKKGPEYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSS 360
Query: 361 ARAAPWLETGDAVANMYSESRGEARDFARIRNACFEQARQAYLIGNKALAKELSMKGQTY 420
ARAAPWLETGDAVANMYSESRGEARDFARIRNACFEQARQAYLIGNKALAKELSMKGQTY
Sbjct: 361 ARAAPWLETGDAVANMYSESRGEARDFARIRNACFEQARQAYLIGNKALAKELSMKGQTY 420
Query: 421 NTQMKASHEKAREAIYRQRNPSSQRGSDRLIDLHGLHVNEAIHILKVELGTLKSTARATG 480
NTQMKASHEKAREAIYRQRNPSSQRGSDRLIDLHGLHVNEAIHILKVELGTLKSTARATG
Sbjct: 421 NTQMKASHEKAREAIYRQRNPSSQRGSDRLIDLHGLHVNEAIHILKVELGTLKSTARATG 480
Query: 481 ERMQVMICVGTGHHTKGSRTARLPIAVEQFLLEEGLHYTQAQPGLLRVVVF 531
ERMQVMICVGTGHHTKGSRTARLPIAVEQFLLEEGLHYTQAQPGLLRVVVF
Sbjct: 481 ERMQVMICVGTGHHTKGSRTARLPIAVEQFLLEEGLHYTQAQPGLLRVVVF 531
>Os03g0180300 Ataxin-2, C-terminal domain containing protein
Length = 527
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 175/322 (54%), Gaps = 26/322 (8%)
Query: 222 ESLAELYYANGCDFNHTIEILTQLEMQVDATSNPTLTPRTPNFSTGDFPALPTVEDQNGF 281
++L + Y+ + F+ T++I++QLE +VD N L R+ +F P+ P QNG
Sbjct: 218 QNLTDAYFGSRRSFSSTMDIMSQLENKVDGRFNQNL--RSLSFGHSSPPS-PASYGQNGL 274
Query: 282 SKGNADILSIFNGRSSPSVSTGTGDFVS--AVRKLASQNSGHWKYKKG--PEYGNGVSTV 337
+ N + + N + D +S A R+ S ++ +Y P G G S
Sbjct: 275 ANYNKEAFGLANNTYRSHSAVLADDILSPSAGREHISLDAPRGRYNTTNLPVSGLGSSRG 334
Query: 338 S--VPKQYSSTTKTSSGNKFQSVSSARAAP-WLETGDAVANMYSESRGEARDFARIRNAC 394
S + ++ S N Q+++ + P WLE D ANM+ ES+ EA DFA +R+A
Sbjct: 335 SQFMASSFNGNHDIVSNNTLQNIAGVQTGPAWLE-ADTAANMFLESKDEAHDFASLRHAL 393
Query: 395 FEQARQAYLIGNKALAKELSMKGQTYNTQMKASHEKAREAIYRQR--NPSSQ---RGSDR 449
EQ RQ L G LAKEL++K + YN Q + + EKAR+ +YRQR P Q + +
Sbjct: 394 LEQDRQVLLTGANPLAKELNIK-ELYNLQSRLAQEKARD-VYRQRFQMPEFQGLVQEQNT 451
Query: 450 LIDLHGLHVNEAIHILKVELGTLKSTARATGERMQVMICVGTGHHTKGSRT-ARLPIAVE 508
IDL GLHV+EAIH L EL + AR+TG R+QV+I T RT ARL AVE
Sbjct: 452 PIDLCGLHVSEAIHALNYELNNRRKIARSTGRRLQVIIISST-------RTPARLTAAVE 504
Query: 509 QFLLEEGLHYTQAQPGLLRVVV 530
Q+LLE G+ YTQAQPGL RV++
Sbjct: 505 QYLLEHGIQYTQAQPGLFRVLL 526
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 17 LPNKVTALNPNAAEFVPSCIRPSFESSAVSDVSKADLRASGK-TILDRXXXXXXXXXXXX 75
L NK TALNPNA EFVPS +R + S SD S+ + S K TI D+
Sbjct: 24 LINKTTALNPNAQEFVPSSLRSINDVSNRSDTSRISVSGSSKDTIADQQDPVIPSNPDEE 83
Query: 76 AHQFWRKQLPDDIIPDFSFEKIEQE--PEELSLAGLSLN 112
AH++W++QLPDDI PDF ++ P+ +SL GLS+N
Sbjct: 84 AHRYWQEQLPDDITPDFKVLGQDEMPGPDNISLTGLSIN 122
>AK111229
Length = 732
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Query: 365 PWLETGDAVANMYSESRGEARDFARIRNACFEQARQAYLIGNKALAKELSMKGQTYNTQM 424
PWLETG+ Y ++R EA +RN + A QA+ + AK LS++GQ+ N M
Sbjct: 520 PWLETGEKGNQAYLKARAEAFKHGSLRNKFLQSAAQAWNRSDSRAAKALSLRGQSENNLM 579
Query: 425 KASHEKAREAIYRQRNPSSQRGSDRLIDLHGLHVNEAIHILKVELGTLKSTARATGERMQ 484
+ +H +A +Y +RN + + +DLHGLH +E++ L+ L S++R
Sbjct: 580 REAHREAARILYEERNKDTDNATGLYVDLHGLHPDESVSYLEGILLKHSSSSRP------ 633
Query: 485 VMICVGTGHHTKGSRTARLPIAVEQFLLE 513
V GTGHH+K + ++ A+ FL E
Sbjct: 634 VYAITGTGHHSKNGKD-KVGKAIRGFLNE 661
>Os04g0442100 Smr protein/MutS2 C-terminal domain containing protein
Length = 387
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 36/183 (19%)
Query: 377 YSESRGEARDFARIRNACFEQARQAYLIGNKALAKELSMKGQTYNTQMKASHEKAREAIY 436
Y R +A R + A A+L G+ A AKELS++ Q + + ++KA + I+
Sbjct: 203 YFNHRKDALKIMRAATKHSQAASNAFLRGDHAAAKELSLRAQEERSAAEELNKKAAKEIF 262
Query: 437 RQRNPSSQRGSDRLIDLHGLHVNEAIHILKVELGTL----------------KSTARATG 480
R RN ++ S +D+HGLH +EA+ +L+ L + +S R +G
Sbjct: 263 RLRNSNN---SIWKLDMHGLHASEAVEVLERHLHRIEFQPPGNNAASSDEVARSEPRVSG 319
Query: 481 ERMQ---------------VMICVGTGHHTKGSRTARLPIAVEQFLLEEGLHYTQAQPGL 525
++ + + G G H+KG A LP+AV FL+E G + + +PG+
Sbjct: 320 PSIEPGPGKVVFVRPIQAILEVITGIGKHSKG--QASLPVAVRGFLIENGYRFDELRPGV 377
Query: 526 LRV 528
V
Sbjct: 378 FSV 380
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,215,048
Number of extensions: 626418
Number of successful extensions: 1236
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1229
Number of HSP's successfully gapped: 6
Length of query: 531
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 425
Effective length of database: 11,501,117
Effective search space: 4887974725
Effective search space used: 4887974725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)