Os04g0442100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Smr protein/MutS2 C-terminal domain containing protein.
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Os04g0442100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Smr protein/MutS2 C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.44 | 0.327 | 9.11 | -0.502 | 1.38 | 0.167 | -0.813 | 4.19 | -0.11 | 7.2 | 31 | 4004 | -- | -- |
| 49.09 | 0.326 | 9.18 | -1.09 | 1.41 | 0.607 | -0.601 | -- | -0.108 | 7.15 | 30.3 | 4819 | -- | -- |
| 50.13 | 0.33 | 9.1 | -0.508 | 1.38 | 0.151 | -- | 4.31 | -0.107 | 7.22 | 31.3 | 3954 | -- | -- |
| 50.42 | 0.331 | 9.17 | -1.15 | 1.42 | 0.619 | -- | -- | -0.0915 | 7.16 | 30.3 | 4833 | -- | -- |
| 149.38 | 0.569 | 9.07 | 0.146 | -- | -0.279 | -- | 7.44 | -0.0956 | -- | 31.2 | 2759 | -- | -- |
| 64.6 | 0.377 | 9.21 | -0.971 | 1.39 | -- | -0.808 | -- | -0.221 | 7.05 | -- | -- | -- | -- |
| 66.31 | 0.381 | 9.2 | -0.987 | 1.39 | -- | -- | -- | -0.219 | 7.06 | -- | -- | -- | -- |
| 148.42 | 0.567 | 9.21 | -1.14 | -- | 0.558 | -- | -- | -0.109 | -- | 30.3 | 5733 | -- | -- |
| 83.67 | 0.426 | 9.16 | -- | 1.4 | 0.426 | -- | -- | -0.0096 | 7.19 | 30.7 | 4956 | -- | -- |
| 168.17 | 0.606 | 9.23 | -0.959 | -- | -- | -- | -- | -0.194 | -- | -- | -- | -- | -- |
| 91.96 | 0.449 | 9.18 | -- | 1.38 | -- | -- | -- | -0.109 | 7.11 | -- | -- | -- | -- |
| 181.27 | 0.627 | 9.19 | -- | -- | 0.427 | -- | -- | -0.0182 | -- | 30.76 | 5751 | -- | -- |
| 192.44 | 0.648 | 9.21 | -- | -- | -- | -- | -- | -0.0871 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.62 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 19 |
| 7 | 48.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 8 | 48.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 11 | 48.67 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 13 | 48.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 15 | 48.71 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 17 | 48.72 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 18 | 48.72 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 22 | 48.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 23 | 48.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 27 | 48.76 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 28 | 48.77 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 29 | 48.77 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 33 | 48.82 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 48 | 48.82 | temperature | 30 | 4320 | > th | dose dependent | rect. | 10 | 6 |
| 70 | 48.87 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 158 | 48.93 | temperature | 30 | 4320 | > th | dose dependent | sin | 2 | NA |
| 163 | 48.94 | temperature | 30 | 4320 | > th | dose dependent | sin | 0 | NA |
| 196 | 48.97 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 272 | 49.00 | temperature | 30 | 1440 | > th | dose independent | sin | 8 | NA |
| 275 | 49.00 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 372 | 49.01 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 376 | 49.02 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 402 | 49.03 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 23 |
| 655 | 49.26 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 662 | 49.27 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 12 |
| 683 | 49.29 | temperature | 30 | 4320 | > th | dose independent | rect. | 9 | 8 |
| 817 | 49.41 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 8 |
| 836 | 49.42 | temperature | 30 | 4320 | > th | dose independent | sin | 22 | NA |
| 842 | 49.42 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 854 | 49.42 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 13 |