BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0442100 Os04g0442100|AK067142
         (387 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23520.1  | chr5:7929591-7931296 REVERSE LENGTH=436            217   7e-57
AT2G26280.1  | chr2:11188143-11190579 REVERSE LENGTH=568           59   5e-09

>AT5G23520.1 | chr5:7929591-7931296 REVERSE LENGTH=436
          Length = 435

 Score =  217 bits (553), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 218/443 (49%), Gaps = 68/443 (15%)

Query: 1   MYRQKIPNSGWAAFDRRWRSKDGRGDDTDVNSFPALSDYIAPS-AASSSVAENSRPKAKP 59
           M   K  +SGW AFD + R K G   + + + FP +S  +  S      +  N  P  K 
Sbjct: 1   MSWMKGKSSGWTAFDLKQRQKQGLESEVEGDPFPPVSTSVNASFGVRGRLRRNHEPSEKS 60

Query: 60  FASVLRP---------SVDCAADGNENGNKHFTCHRENANYGLKSASEN-KIELLRGAHS 109
           F+SVL P         + DC      N  +   C R+     L   S +     L+  +S
Sbjct: 61  FSSVLLPPSRFPALTENKDCG-----NQERGGCCRRKPDTLSLPVNSHDLAFTKLKEMNS 115

Query: 110 WADSNLIEDVLASVNNDVGEASALLKAMASPCFPIREDGLP---------DQLSSE---I 157
           WAD NLI DVL S  +D   A A LK M S     +ED  P         D   SE    
Sbjct: 116 WADDNLIRDVLLSTEDDFEMALAFLKGMVSSG---KEDEEPTSKIEGYSSDNRRSEYRTF 172

Query: 158 NKT------------------HGLPSGNGTA------ENNLVND--SQLLPLPMNMSSVP 191
            KT                  + L + +G++      +N    D  S+L  +   + S+P
Sbjct: 173 EKTVTSSVKMAARSTFEDAGKYDLENSDGSSFLVNASDNEKFPDDISELDSIIQRLQSIP 232

Query: 192 IEPEVEELDDDYFNHRKDALKIMRAATKHSQAASNAFLRGDHAAAKELSLRAQEERSXXX 251
           IEPE EE DD Y +HRKDALK+MR+A+ HS+AA NAF R DHA+AK+ S +A+E+     
Sbjct: 233 IEPEWEE-DDLYLSHRKDALKVMRSASNHSRAAQNAFQRYDHASAKQHSDKAREDWLAAE 291

Query: 252 XXXXXXXXXIFRLRNSNNSIWKLDMHGLHASEAVEVLERHLHRIEFQPPGNNAASSDEVA 311
                    I  + N +N IWKLD+HGLHA+EAV+ L+  L  IE     N + S +   
Sbjct: 292 KLNAEAAKKIIGITNKDNDIWKLDLHGLHATEAVQALQERLQMIEGHFTVNRSVSPNRGR 351

Query: 312 RSEPRVSGPSIEPGPGKV---------VFVRPIQAILEVITGIGKHSKGQASLPVAVRGF 362
                +   S EP  G++            R ++  L+VITGIGKHS+GQASLP+AV+ F
Sbjct: 352 SKNAALRSASQEPF-GRLDEEGMHCQRTSSRELRNSLQVITGIGKHSRGQASLPLAVKTF 410

Query: 363 LIENGYRFDELRPGVFSVRPKFR 385
             +N YRFDE RPGV +VRPKFR
Sbjct: 411 FEDNRYRFDETRPGVITVRPKFR 433



>AT2G26280.1 | chr2:11188143-11190579 REVERSE LENGTH=568
          Length = 567

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 41/188 (21%)

Query: 203 YFNHRKDALKIMRAATKHSQAASNAFLRGDHAAAKELSLRAQEERSXXXXXXXXXXXXIF 262
           Y   R++A    R    + + A  A+L G+ A AKELS++ Q                I+
Sbjct: 408 YSELREEARDYARLRNVYFEQARQAYLVGNKALAKELSVKGQLHNMQMKAAHGKAQEAIY 467

Query: 263 RLRN------SNNSIWKLDMHGLHASEAVEVLERHLHRIEFQPPGNNAASSDEVARSEPR 316
           R RN      S  +   +D+HGLH SEA++VL+  L                 V RS  R
Sbjct: 468 RQRNPVGQGNSRGNERMIDLHGLHVSEALQVLKHEL----------------SVLRSTAR 511

Query: 317 VSGPSIEPGPGKVVFVRPIQAILEVITGIGKHSKGQ---ASLPVAVRGFLI-ENGYRFDE 372
            +   ++               + +  G G H++G    A LPVAV+ +L+ E G  + E
Sbjct: 512 ATQERLQ---------------IYICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYSE 556

Query: 373 LRPGVFSV 380
            + G+  V
Sbjct: 557 PQAGLLRV 564



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,584,750
Number of extensions: 363455
Number of successful extensions: 774
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 770
Number of HSP's successfully gapped: 3
Length of query: 387
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 287
Effective length of database: 8,364,969
Effective search space: 2400746103
Effective search space used: 2400746103
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)