BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0196600 Os06g0196600|AK060515
(465 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0196600 Similar to 3-oxoacyl-[acyl-carrier-protein] sy... 837 0.0
Os04g0445700 Similar to 3-oxoacyl-[acyl-carrier-protein] sy... 759 0.0
Os07g0616200 Similar to Beta-ketoacyl-ACP synthase 499 e-141
Os02g0196900 Similar to 3-oxoacyl-[acyl-carrier-protein] sy... 201 9e-52
>Os06g0196600 Similar to 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast
precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I)
(KAS I)
Length = 465
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/465 (89%), Positives = 416/465 (89%)
Query: 1 MQSLLLPTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETDPRKRVVITGMGL 60
MQSLLLPTF ETDPRKRVVITGMGL
Sbjct: 1 MQSLLLPTFAAASAAPPRRGRVPPAGRASVSVRASASAAAVAPRRETDPRKRVVITGMGL 60
Query: 61 VSVFGNDVDAYYDRLLAGESGIGPIDRFDASNFPTRFAGQIRGFSSEGYIDGKNDRRLDD 120
VSVFGNDVDAYYDRLLAGESGIGPIDRFDASNFPTRFAGQIRGFSSEGYIDGKNDRRLDD
Sbjct: 61 VSVFGNDVDAYYDRLLAGESGIGPIDRFDASNFPTRFAGQIRGFSSEGYIDGKNDRRLDD 120
Query: 121 CLRYCIVSGKKALESAGLALGSKSMDKIEKTRAXXXXXXXXXXXXXFSDGVQNLIEKGHR 180
CLRYCIVSGKKALESAGLALGSKSMDKIEKTRA FSDGVQNLIEKGHR
Sbjct: 121 CLRYCIVSGKKALESAGLALGSKSMDKIEKTRAGVLVGTGMGGLTVFSDGVQNLIEKGHR 180
Query: 181 KITPFFIPYAITNMGSALLGMDIGFMGPNYSISTACATSNYCFYAAANHIRRGEADVMIA 240
KITPFFIPYAITNMGSALLGMDIGFMGPNYSISTACATSNYCFYAAANHIRRGEADVMIA
Sbjct: 181 KITPFFIPYAITNMGSALLGMDIGFMGPNYSISTACATSNYCFYAAANHIRRGEADVMIA 240
Query: 241 GGTEAAIIPIGVGGFVACRALSQRNDDPKTASRPWDQDRDGFVMGEGAGVLVMESLEHAM 300
GGTEAAIIPIGVGGFVACRALSQRNDDPKTASRPWDQDRDGFVMGEGAGVLVMESLEHAM
Sbjct: 241 GGTEAAIIPIGVGGFVACRALSQRNDDPKTASRPWDQDRDGFVMGEGAGVLVMESLEHAM 300
Query: 301 KRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCIKQSLADAGVAPEEVNYINAHATST 360
KRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCIKQSLADAGVAPEEVNYINAHATST
Sbjct: 301 KRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCIKQSLADAGVAPEEVNYINAHATST 360
Query: 361 LAGDLAEVNAIRQVFKDPSEIKINATKSMIGHCLGAAGGLEAIATVKAITTGWVHPSINQ 420
LAGDLAEVNAIRQVFKDPSEIKINATKSMIGHCLGAAGGLEAIATVKAITTGWVHPSINQ
Sbjct: 361 LAGDLAEVNAIRQVFKDPSEIKINATKSMIGHCLGAAGGLEAIATVKAITTGWVHPSINQ 420
Query: 421 FNPEPAVEFDTVPNVKKQHEVNVGISNSFGFGGHNSVVVFAPFKP 465
FNPEPAVEFDTVPNVKKQHEVNVGISNSFGFGGHNSVVVFAPFKP
Sbjct: 421 FNPEPAVEFDTVPNVKKQHEVNVGISNSFGFGGHNSVVVFAPFKP 465
>Os04g0445700 Similar to 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast
precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I)
(KAS I)
Length = 442
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/420 (86%), Positives = 387/420 (92%)
Query: 46 ETDPRKRVVITGMGLVSVFGNDVDAYYDRLLAGESGIGPIDRFDASNFPTRFAGQIRGFS 105
ETDPRKRVVITGMGLVSVFGN+VDA+Y+RLLAGESG+G IDRFDA FPTRFAGQIRGFS
Sbjct: 23 ETDPRKRVVITGMGLVSVFGNEVDAFYERLLAGESGVGAIDRFDAGGFPTRFAGQIRGFS 82
Query: 106 SEGYIDGKNDRRLDDCLRYCIVSGKKALESAGLALGSKSMDKIEKTRAXXXXXXXXXXXX 165
SEGYIDGKNDRRLDDCLRYCIVSGKKALE+AGL GS K++K RA
Sbjct: 83 SEGYIDGKNDRRLDDCLRYCIVSGKKALENAGLGKGSDGHTKLDKVRAGVLVGTGMGGLT 142
Query: 166 XFSDGVQNLIEKGHRKITPFFIPYAITNMGSALLGMDIGFMGPNYSISTACATSNYCFYA 225
FSDGVQNLIEKG++KI+PFFIPYAITNMGSALL MD GFMGPNYSISTACATSNYCFYA
Sbjct: 143 VFSDGVQNLIEKGYKKISPFFIPYAITNMGSALLAMDAGFMGPNYSISTACATSNYCFYA 202
Query: 226 AANHIRRGEADVMIAGGTEAAIIPIGVGGFVACRALSQRNDDPKTASRPWDQDRDGFVMG 285
AANHIRRGEADV++AGGTEAAIIPIG+GGFVACRALSQRNDDP+TASRPWD++RDGFVMG
Sbjct: 203 AANHIRRGEADVIVAGGTEAAIIPIGLGGFVACRALSQRNDDPETASRPWDKERDGFVMG 262
Query: 286 EGAGVLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCIKQSLADAGV 345
EGAGVLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCI QSL DAGV
Sbjct: 263 EGAGVLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCITQSLEDAGV 322
Query: 346 APEEVNYINAHATSTLAGDLAEVNAIRQVFKDPSEIKINATKSMIGHCLGAAGGLEAIAT 405
APEEVNYINAHATSTLAGDLAEV AI+QVFK+PS+IKIN+TKSMIGHCLGAAGGLEAIA
Sbjct: 323 APEEVNYINAHATSTLAGDLAEVRAIKQVFKNPSDIKINSTKSMIGHCLGAAGGLEAIAV 382
Query: 406 VKAITTGWVHPSINQFNPEPAVEFDTVPNVKKQHEVNVGISNSFGFGGHNSVVVFAPFKP 465
VKAITTGWVHP+INQFNPEP V+FDTV N K+QHEVNV ISNSFGFGGHNSVVVFAPFKP
Sbjct: 383 VKAITTGWVHPTINQFNPEPEVDFDTVANEKQQHEVNVAISNSFGFGGHNSVVVFAPFKP 442
>Os07g0616200 Similar to Beta-ketoacyl-ACP synthase
Length = 507
Score = 499 bits (1284), Expect = e-141, Method: Compositional matrix adjust.
Identities = 238/416 (57%), Positives = 312/416 (75%), Gaps = 4/416 (0%)
Query: 50 RKRVVITGMGLVSVFGNDVDAYYDRLLAGESGIGPIDRFDASNFPTRFAGQIRGFSSEGY 109
++RVVITGMG+V+ G+D D +Y+ LL G SGI I+RFD S FPTR AG+I+ FS++G+
Sbjct: 95 QRRVVITGMGVVTPLGHDPDVFYNNLLDGVSGISEIERFDCSTFPTRIAGEIKSFSTDGW 154
Query: 110 IDGKNDRRLDDCLRYCIVSGKKALESAGLALGSKSMDKIEKTRAXXXXXXXXXXXXXFSD 169
+ K RR+D + Y I +GKKALE GL + ++++KTR F+D
Sbjct: 155 VAPKLARRMDKFMLYLITAGKKALEHGGLT--EELRNELDKTRCGVLIGSAMGGMKVFND 212
Query: 170 GVQNLIEKGHRKITPFFIPYAITNMGSALLGMDIGFMGPNYSISTACATSNYCFYAAANH 229
++ L ++K+ PF +P+A TNMGSA+L MD+G+MGPNYSISTACATSN+C AANH
Sbjct: 213 AIEAL-RVSYKKMNPFCVPFATTNMGSAILAMDLGWMGPNYSISTACATSNFCILNAANH 271
Query: 230 IRRGEADVMIAGGTEAAIIPIGVGGFVACRALSQRNDDPKTASRPWDQDRDGFVMGEGAG 289
IRRGEADVM+ GG++A +IPIG+GGFVACRALSQRN DP ASRPWD DRDGFVMGEGAG
Sbjct: 272 IRRGEADVMLCGGSDAPLIPIGLGGFVACRALSQRNSDPTKASRPWDVDRDGFVMGEGAG 331
Query: 290 VLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCIKQSLADAGVAPEE 349
VLV+E LEHA +R A I AE+LGG+ CDAYHMT+P +G G+ CI+++LAD+GVA EE
Sbjct: 332 VLVLEELEHAKQRGAKIYAEFLGGSFTCDAYHMTEPHPEGRGIILCIEKALADSGVAREE 391
Query: 350 VNYINAHATSTLAGDLAEVNAIRQVFKDPSEIKINATKSMIGHCLGAAGGLEAIATVKAI 409
+NY+NAHATST +GDL E AI + F ++++N+TKSM GH +GAAGG+EA+A ++AI
Sbjct: 392 INYVNAHATSTQSGDLKEYEAIVRCFGQNPQLRVNSTKSMTGHLIGAAGGIEAVAAIQAI 451
Query: 410 TTGWVHPSINQFNPEPAVEFDTVPNVKKQH-EVNVGISNSFGFGGHNSVVVFAPFK 464
TGWVHP++N NPE V+ + +K+ +VNV +SNSFGFGGHNS ++FAPFK
Sbjct: 452 RTGWVHPNLNLENPEKIVDVGVLVGSQKERCKVNVALSNSFGFGGHNSSILFAPFK 507
>Os02g0196900 Similar to 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial
precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase)
(mtKAS)
Length = 239
Score = 201 bits (511), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 158/234 (67%), Gaps = 5/234 (2%)
Query: 233 GEADVMIAGGTEAAIIPIGVGGFVACRALSQR-NDDPKTASRPWDQDRDGFVMGEGAGVL 291
G+ADVM+AGGTE++I + + GF RALS + N P+ ASRP+D RDGFV+GEG GV+
Sbjct: 3 GDADVMVAGGTESSIDALSIAGFSRLRALSTKYNSLPQAASRPFDCGRDGFVIGEGCGVM 62
Query: 292 VMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCIKQSLADAGVAPEEVN 351
V+E+L+HA +R A I AE G ++ DA+H+T P++DG G + +K++L +G+ ++++
Sbjct: 63 VLEALDHAKERGAKIYAEVRGYGMSGDAHHITQPQNDGRGATLAMKRALDQSGLQADQID 122
Query: 352 YINAHATSTLAGDLAEVNAIRQVFKDPSE---IKINATKSMIGHCLGAAGGLEAIATVKA 408
Y+NAHATST GD E NAI+ VF D + + +++TK IGH LGAAG +EAI TV A
Sbjct: 123 YLNAHATSTPLGDAVEANAIKSVFGDHATSGGLALSSTKGAIGHLLGAAGSVEAIFTVLA 182
Query: 409 ITTGWVHPSINQFNPEPAVEFDTVP-NVKKQHEVNVGISNSFGFGGHNSVVVFA 461
I G P++N P+ E +P + K+ + ISNSFGFGG N+ ++F+
Sbjct: 183 IHHGIAPPTLNLEKPDTLFEGAFMPLSSPKKMPIRAAISNSFGFGGTNTSLLFS 236
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,541,258
Number of extensions: 614117
Number of successful extensions: 1414
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1407
Number of HSP's successfully gapped: 4
Length of query: 465
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 361
Effective length of database: 11,605,545
Effective search space: 4189601745
Effective search space used: 4189601745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)