Os02g0196900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase) (mtKAS).
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Os02g0196900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase) (mtKAS).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.23 | 0.333 | 8.25 | -0.513 | 0.394 | -0.493 | 0.228 | -0.276 | -0.193 | 12.8 | 24.8 | 231 | -- | -- |
| 50.42 | 0.331 | 8.26 | -0.578 | 0.393 | -0.511 | 0.282 | -- | -0.225 | 12.8 | 24.7 | 226 | -- | -- |
| 50.32 | 0.33 | 8.25 | -0.477 | 0.399 | -0.482 | -- | -0.354 | -0.182 | 13 | 24.61 | 219 | -- | -- |
| 50.75 | 0.332 | 8.26 | -0.587 | 0.396 | -0.504 | -- | -- | -0.222 | 13 | 24.7 | 219 | -- | -- |
| 58.13 | 0.355 | 8.29 | -0.538 | -- | -0.585 | -- | -0.205 | -0.258 | -- | 24.8 | 156 | -- | -- |
| 64.01 | 0.375 | 8.21 | -0.44 | 0.628 | -- | 0.386 | -- | 0.0386 | 14.5 | -- | -- | -- | -- |
| 64.54 | 0.376 | 8.21 | -0.429 | 0.63 | -- | -- | -- | 0.041 | 14.5 | -- | -- | -- | -- |
| 58.34 | 0.356 | 8.28 | -0.629 | -- | -0.613 | -- | -- | -0.291 | -- | 24.78 | 148 | -- | -- |
| 59.57 | 0.359 | 8.24 | -- | 0.413 | -0.425 | -- | -- | -0.116 | 13.2 | 24.8 | 221 | -- | -- |
| 87.83 | 0.438 | 8.21 | -0.456 | -- | -- | -- | -- | 0.0252 | -- | -- | -- | -- | -- |
| 69.4 | 0.39 | 8.2 | -- | 0.638 | -- | -- | -- | 0.0888 | 14.6 | -- | -- | -- | -- |
| 68.03 | 0.384 | 8.26 | -- | -- | -0.555 | -- | -- | -0.185 | -- | 24.97 | 125 | -- | -- |
| 93.32 | 0.451 | 8.2 | -- | -- | -- | -- | -- | 0.0758 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.37 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 18 |
| 2 | 42.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 30 | 44.98 | temperature | 20 | 90 | > th | dose dependent | sin | 5 | NA |
| 42 | 45.27 | temperature | 15 | 10 | > th | dose dependent | sin | 3 | NA |
| 51 | 45.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 72 | 45.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 106 | 46.20 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 114 | 46.29 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 19 |
| 119 | 46.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 142 | 46.64 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 20 |
| 240 | 47.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 257 | 47.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 276 | 47.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 296 | 47.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 318 | 47.90 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 354 | 48.05 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 358 | 48.07 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 373 | 48.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 507 | 48.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 866 | 49.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 980 | 50.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |