BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0196900 Os02g0196900|AK063866
(239 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0196900 Similar to 3-oxoacyl-[acyl-carrier-protein] sy... 486 e-138
Os07g0616200 Similar to Beta-ketoacyl-ACP synthase 218 4e-57
Os06g0196600 Similar to 3-oxoacyl-[acyl-carrier-protein] sy... 201 3e-52
Os04g0445700 Similar to 3-oxoacyl-[acyl-carrier-protein] sy... 194 5e-50
>Os02g0196900 Similar to 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial
precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase)
(mtKAS)
Length = 239
Score = 486 bits (1250), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 QFGDADVMVAGGTESSIDALSIAGFSRLRALSTKYNSLPQAASRPFDCGRDGFVIGEGCG 60
QFGDADVMVAGGTESSIDALSIAGFSRLRALSTKYNSLPQAASRPFDCGRDGFVIGEGCG
Sbjct: 1 QFGDADVMVAGGTESSIDALSIAGFSRLRALSTKYNSLPQAASRPFDCGRDGFVIGEGCG 60
Query: 61 VMVLEALDHAKERGAKIYAEVRGYGMSGDAHHITQPQNDGRGATLAMKRALDQSGLQADQ 120
VMVLEALDHAKERGAKIYAEVRGYGMSGDAHHITQPQNDGRGATLAMKRALDQSGLQADQ
Sbjct: 61 VMVLEALDHAKERGAKIYAEVRGYGMSGDAHHITQPQNDGRGATLAMKRALDQSGLQADQ 120
Query: 121 IDYLNAHATSTPLGDAVEANAIKSVFGDHATSGGLALSSTKGAIGHLLGAAGSVEAIFTV 180
IDYLNAHATSTPLGDAVEANAIKSVFGDHATSGGLALSSTKGAIGHLLGAAGSVEAIFTV
Sbjct: 121 IDYLNAHATSTPLGDAVEANAIKSVFGDHATSGGLALSSTKGAIGHLLGAAGSVEAIFTV 180
Query: 181 LAIHHGIAPPTLNLEKPDTLFEGAFMPLSSPKKMPIRAAISNSFGFGGTNTSLLFSCPP 239
LAIHHGIAPPTLNLEKPDTLFEGAFMPLSSPKKMPIRAAISNSFGFGGTNTSLLFSCPP
Sbjct: 181 LAIHHGIAPPTLNLEKPDTLFEGAFMPLSSPKKMPIRAAISNSFGFGGTNTSLLFSCPP 239
>Os07g0616200 Similar to Beta-ketoacyl-ACP synthase
Length = 507
Score = 218 bits (554), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 157/234 (67%), Gaps = 4/234 (1%)
Query: 3 GDADVMVAGGTESSIDALSIAGFSRLRALSTKYNSLPQAASRPFDCGRDGFVIGEGCGVM 62
G+ADVM+ GG+++ + + + GF RALS + NS P ASRP+D RDGFV+GEG GV+
Sbjct: 275 GEADVMLCGGSDAPLIPIGLGGFVACRALSQR-NSDPTKASRPWDVDRDGFVMGEGAGVL 333
Query: 63 VLEALDHAKERGAKIYAEVRGYGMSGDAHHITQPQNDGRGATLAMKRALDQSGLQADQID 122
VLE L+HAK+RGAKIYAE G + DA+H+T+P +GRG L +++AL SG+ ++I+
Sbjct: 334 VLEELEHAKQRGAKIYAEFLGGSFTCDAYHMTEPHPEGRGIILCIEKALADSGVAREEIN 393
Query: 123 YLNAHATSTPLGDAVEANAIKSVFGDHATSGGLALSSTKGAIGHLLGAAGSVEAIFTVLA 182
Y+NAHATST GD E AI FG + L ++STK GHL+GAAG +EA+ + A
Sbjct: 394 YVNAHATSTQSGDLKEYEAIVRCFGQNPQ---LRVNSTKSMTGHLIGAAGGIEAVAAIQA 450
Query: 183 IHHGIAPPTLNLEKPDTLFEGAFMPLSSPKKMPIRAAISNSFGFGGTNTSLLFS 236
I G P LNLE P+ + + + S ++ + A+SNSFGFGG N+S+LF+
Sbjct: 451 IRTGWVHPNLNLENPEKIVDVGVLVGSQKERCKVNVALSNSFGFGGHNSSILFA 504
>Os06g0196600 Similar to 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast
precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I)
(KAS I)
Length = 465
Score = 201 bits (511), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 158/234 (67%), Gaps = 5/234 (2%)
Query: 3 GDADVMVAGGTESSIDALSIAGFSRLRALSTKYNSLPQAASRPFDCGRDGFVIGEGCGVM 62
G+ADVM+AGGTE++I + + GF RALS + N P+ ASRP+D RDGFV+GEG GV+
Sbjct: 233 GEADVMIAGGTEAAIIPIGVGGFVACRALSQR-NDDPKTASRPWDQDRDGFVMGEGAGVL 291
Query: 63 VLEALDHAKERGAKIYAEVRGYGMSGDAHHITQPQNDGRGATLAMKRALDQSGLQADQID 122
V+E+L+HA +R A I AE G ++ DA+H+T P++DG G + +K++L +G+ ++++
Sbjct: 292 VMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCIKQSLADAGVAPEEVN 351
Query: 123 YLNAHATSTPLGDAVEANAIKSVFGDHATSGGLALSSTKGAIGHLLGAAGSVEAIFTVLA 182
Y+NAHATST GD E NAI+ VF D + + +++TK IGH LGAAG +EAI TV A
Sbjct: 352 YINAHATSTLAGDLAEVNAIRQVFKDPSE---IKINATKSMIGHCLGAAGGLEAIATVKA 408
Query: 183 IHHGIAPPTLNLEKPDTLFEGAFMPLSSPKKMPIRAAISNSFGFGGTNTSLLFS 236
I G P++N P+ E +P + K+ + ISNSFGFGG N+ ++F+
Sbjct: 409 ITTGWVHPSINQFNPEPAVEFDTVP-NVKKQHEVNVGISNSFGFGGHNSVVVFA 461
>Os04g0445700 Similar to 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast
precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I)
(KAS I)
Length = 442
Score = 194 bits (493), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 158/235 (67%), Gaps = 7/235 (2%)
Query: 3 GDADVMVAGGTESSIDALSIAGFSRLRALSTKYNSLPQAASRPFDCGRDGFVIGEGCGVM 62
G+ADV+VAGGTE++I + + GF RALS + N P+ ASRP+D RDGFV+GEG GV+
Sbjct: 210 GEADVIVAGGTEAAIIPIGLGGFVACRALSQR-NDDPETASRPWDKERDGFVMGEGAGVL 268
Query: 63 VLEALDHAKERGAKIYAEVRGYGMSGDAHHITQPQNDGRGATLAMKRALDQSGLQADQID 122
V+E+L+HA +R A I AE G ++ DA+H+T P++DG G + + ++L+ +G+ ++++
Sbjct: 269 VMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCITQSLEDAGVAPEEVN 328
Query: 123 YLNAHATSTPLGDAVEANAIKSVFGDHATSGGLALSSTKGAIGHLLGAAGSVEAIFTVLA 182
Y+NAHATST GD E AIK VF + + + ++STK IGH LGAAG +EAI V A
Sbjct: 329 YINAHATSTLAGDLAEVRAIKQVFKNPSD---IKINSTKSMIGHCLGAAGGLEAIAVVKA 385
Query: 183 IHHGIAPPTLNLEKPDTLFEGAFMPLSSPKKM-PIRAAISNSFGFGGTNTSLLFS 236
I G PT+N P+ E F +++ K+ + AISNSFGFGG N+ ++F+
Sbjct: 386 ITTGWVHPTINQFNPEP--EVDFDTVANEKQQHEVNVAISNSFGFGGHNSVVVFA 438
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,521,590
Number of extensions: 352054
Number of successful extensions: 919
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 911
Number of HSP's successfully gapped: 4
Length of query: 239
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 141
Effective length of database: 11,918,829
Effective search space: 1680554889
Effective search space used: 1680554889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)