BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0187900 Os06g0187900|AK071765
(185 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0187900 RNA-binding region RNP-1 (RNA recognition moti... 154 4e-38
Os02g0789400 Similar to 9G8-like SR protein (RSZp22 splicin... 122 2e-28
Os02g0610600 Similar to 9G8-like SR protein (RSZp22 splicin... 119 2e-27
>Os06g0187900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 185
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/185 (49%), Positives = 91/185 (49%)
Query: 1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGXXXXXXXXXXXXXXXXXXXXG 60
MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPG G
Sbjct: 1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60
Query: 61 KNGWRVELSRNAXXXXXXXXXXXXXESKCYECGETGHFARECXXXXXXXXXXXXXXXXXX 120
KNGWRVELSRNA ESKCYECGETGHFAREC
Sbjct: 61 KNGWRVELSRNASSGRGGRDRYGSSESKCYECGETGHFARECRLRIGSGGLGSGRRRSRS 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQYNRGRDESPAYDNGY 180
PQYNRGRDESPAYDNGY
Sbjct: 121 RSRSRSPRYRRSPSYGRRSYSPAGRSPRRRSVSPARARSYSRSPQYNRGRDESPAYDNGY 180
Query: 181 RRSRS 185
RRSRS
Sbjct: 181 RRSRS 185
>Os02g0789400 Similar to 9G8-like SR protein (RSZp22 splicing factor)
Length = 185
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGXXXXXXXXXXXXXXXXXXXXG 60
MAR+YVGNLDPRVT+ ELEDEFRVFGVLRSVWVARKPPG G
Sbjct: 1 MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60
Query: 61 KNGWRVELSRNAXXXXXXXXXXXXXESKCYECGETGHFAREC 102
KNGWRVELSRN+ E KCYECGETGHFAREC
Sbjct: 61 KNGWRVELSRNS-SSRGGRDRHGGSEMKCYECGETGHFAREC 101
>Os02g0610600 Similar to 9G8-like SR protein (RSZp22 splicing factor)
Length = 200
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGXXXXXXXXXXXXXXXXXXXXG 60
MARVYVGNLDPRVTARE+EDEFRVFGVLRSVWVARKPPG G
Sbjct: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDG 60
Query: 61 KNGWRVELSRNAXXXXXXXXXXXXXESKCYECGETGHFAREC 102
KNGWRVELS A + KCYECGE GHFAREC
Sbjct: 61 KNGWRVELSTKA-GSGRGRDRSGGSDMKCYECGEPGHFAREC 101
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,396,870
Number of extensions: 67119
Number of successful extensions: 918
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 913
Number of HSP's successfully gapped: 3
Length of query: 185
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 90
Effective length of database: 12,075,471
Effective search space: 1086792390
Effective search space used: 1086792390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)