Os06g0187900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0187900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.28 | 0.222 | 9.76 | -0.131 | 0.431 | 0.661 | 0.382 | 1.18 | -0.0115 | 8.85 | 20.58 | 10 | -- | -- |
| 22.54 | 0.221 | 9.78 | -0.265 | 0.455 | 0.743 | 0.615 | -- | -0.0291 | 8.76 | 23.89 | 5 | -- | -- |
| 22.67 | 0.222 | 9.76 | -0.0885 | 0.429 | 0.661 | -- | 1.37 | -0.00378 | 8.69 | 20.75 | 4 | -- | -- |
| 23.48 | 0.226 | 9.78 | -0.301 | 0.454 | 0.79 | -- | -- | -0.0493 | 8.31 | 23.7 | 5 | -- | -- |
| 32.89 | 0.267 | 9.78 | -0.114 | -- | 0.739 | -- | 1.29 | -0.0165 | -- | 20.2 | 3 | -- | -- |
| 30.9 | 0.261 | 9.76 | -0.195 | 0.521 | -- | 0.762 | -- | 0.052 | 11 | -- | -- | -- | -- |
| 33.31 | 0.27 | 9.76 | -0.166 | 0.519 | -- | -- | -- | 0.0538 | 10.8 | -- | -- | -- | -- |
| 34.48 | 0.273 | 9.8 | -0.33 | -- | 0.804 | -- | -- | -0.0773 | -- | 21 | 4 | -- | -- |
| 25.8 | 0.238 | 9.77 | -- | 0.451 | 0.708 | -- | -- | -0.00157 | 8.61 | 24 | 13 | -- | -- |
| 50 | 0.33 | 9.77 | -0.176 | -- | -- | -- | -- | 0.0507 | -- | -- | -- | -- | -- |
| 34.03 | 0.273 | 9.75 | -- | 0.521 | -- | -- | -- | 0.0723 | 10.8 | -- | -- | -- | -- |
| 37.14 | 0.284 | 9.79 | -- | -- | 0.727 | -- | -- | -0.0355 | -- | 22.28 | 2 | -- | -- |
| 50.82 | 0.333 | 9.77 | -- | -- | -- | -- | -- | 0.0702 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.59 | temperature | 20 | 30 | > th | dose dependent | sin | 2 | NA |
| 29 | 20.44 | temperature | 30 | 30 | < th | dose dependent | sin | 2 | NA |
| 61 | 21.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 63 | 21.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 17 |
| 77 | 21.44 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 18 |
| 88 | 21.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 121 | 21.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 126 | 21.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 127 | 21.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 138 | 22.03 | temperature | 25 | 90 | > th | dose independent | sin | 4 | NA |
| 167 | 22.14 | temperature | 25 | 90 | < th | dose independent | sin | 2 | NA |
| 188 | 22.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 191 | 22.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 208 | 22.31 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 210 | 22.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 221 | 22.35 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 223 | 22.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 230 | 22.38 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 253 | 22.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 259 | 22.46 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 275 | 22.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 286 | 22.52 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 296 | 22.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 322 | 22.63 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 351 | 22.69 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 376 | 22.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 391 | 22.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 406 | 22.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 418 | 22.82 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 14 |
| 519 | 22.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 530 | 23.00 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 17 |
| 555 | 23.03 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 15 |
| 576 | 23.06 | temperature | 25 | 90 | > th | dose independent | rect. | 21 | 21 |
| 591 | 23.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 599 | 23.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 605 | 23.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 610 | 23.11 | temperature | 25 | 10 | < th | dose independent | sin | 1 | NA |
| 618 | 23.12 | temperature | 25 | 10 | > th | dose independent | sin | 1 | NA |
| 619 | 23.12 | temperature | 25 | 270 | > th | dose independent | rect. | 3 | 13 |
| 625 | 23.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 636 | 23.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 655 | 23.16 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 757 | 23.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 758 | 23.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 788 | 23.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 801 | 23.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 848 | 23.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 861 | 23.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 895 | 23.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 909 | 23.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 921 | 23.44 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 10 |