BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0187900 Os06g0187900|AK071765
(185 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G24590.1 | chr2:10449837-10450860 FORWARD LENGTH=197 107 3e-24
AT1G23860.1 | chr1:8428091-8429164 REVERSE LENGTH=188 107 3e-24
AT4G31580.1 | chr4:15306983-15308064 FORWARD LENGTH=201 107 3e-24
>AT2G24590.1 | chr2:10449837-10450860 FORWARD LENGTH=197
Length = 196
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 63/111 (56%), Gaps = 9/111 (8%)
Query: 1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGXXXXXXXXXXXXXXXXXXXXG 60
M+RVYVGNLDPRVT RELEDEFR FGV+RSVWVAR+PPG G
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
Query: 61 KNGWRVELSRN---------AXXXXXXXXXXXXXESKCYECGETGHFAREC 102
KNGWRVE S N + KCYECGE+GHFAREC
Sbjct: 61 KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFAREC 111
>AT1G23860.1 | chr1:8428091-8429164 REVERSE LENGTH=188
Length = 187
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGXXXXXXXXXXXXXXXXXXXXG 60
M RVYVGNLDPRVT RELEDEF+ FGVLR+VWVAR+PPG
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60
Query: 61 KNGWRVELSR--NAXXXXXXXXXXXXXESKCYECGETGHFAREC 102
KNGWRVELS +SKCYECGE GHFAREC
Sbjct: 61 KNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>AT4G31580.1 | chr4:15306983-15308064 FORWARD LENGTH=201
Length = 200
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 63/114 (55%), Gaps = 12/114 (10%)
Query: 1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGXXXXXXXXXXXXXXXXXXXXG 60
M+RVYVGNLDPRVT RELEDEFR FGV+RSVWVAR+PPG G
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
Query: 61 KNGWRVELSRN------------AXXXXXXXXXXXXXESKCYECGETGHFAREC 102
KNGWRVE S N + KCYECGETGHFAREC
Sbjct: 61 KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFAREC 114
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,140,932
Number of extensions: 41541
Number of successful extensions: 265
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 3
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)