BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0186600 Os06g0186600|AK099819
(472 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0186600 Conserved hypothetical protein 966 0.0
Os02g0793800 Conserved hypothetical protein 442 e-124
Os09g0128400 Conserved hypothetical protein 249 3e-66
>Os06g0186600 Conserved hypothetical protein
Length = 472
Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/472 (100%), Positives = 472/472 (100%)
Query: 1 MYHNVLDEPSPLGLRLRKSPSLLDLIQMRLSQANSTAGQSSADDCSSEPPKKKDLKSGTS 60
MYHNVLDEPSPLGLRLRKSPSLLDLIQMRLSQANSTAGQSSADDCSSEPPKKKDLKSGTS
Sbjct: 1 MYHNVLDEPSPLGLRLRKSPSLLDLIQMRLSQANSTAGQSSADDCSSEPPKKKDLKSGTS 60
Query: 61 TAGERLKASNFPANILRIGTWEYISRYEGDLVAKCYFAKHKLVWEVLEGGLKSKIEIQWS 120
TAGERLKASNFPANILRIGTWEYISRYEGDLVAKCYFAKHKLVWEVLEGGLKSKIEIQWS
Sbjct: 61 TAGERLKASNFPANILRIGTWEYISRYEGDLVAKCYFAKHKLVWEVLEGGLKSKIEIQWS 120
Query: 121 DITALKASCPENGQGTLDVVLARPPLFFKETDPQPRKHTLWQATSDFTGGQASMNRRHFL 180
DITALKASCPENGQGTLDVVLARPPLFFKETDPQPRKHTLWQATSDFTGGQASMNRRHFL
Sbjct: 121 DITALKASCPENGQGTLDVVLARPPLFFKETDPQPRKHTLWQATSDFTGGQASMNRRHFL 180
Query: 181 QCPSSLLSKNFEKLLQCDQRLNQLSQQPDIILDSPVFEPRCSIFEDPVESKCQGFTNLKD 240
QCPSSLLSKNFEKLLQCDQRLNQLSQQPDIILDSPVFEPRCSIFEDPVESKCQGFTNLKD
Sbjct: 181 QCPSSLLSKNFEKLLQCDQRLNQLSQQPDIILDSPVFEPRCSIFEDPVESKCQGFTNLKD 240
Query: 241 EHELSGFSGSLSPCAGSSMSAKIEVNDSIATQAGFLAQPGNPGPSAVNVQGVSRNVNGAP 300
EHELSGFSGSLSPCAGSSMSAKIEVNDSIATQAGFLAQPGNPGPSAVNVQGVSRNVNGAP
Sbjct: 241 EHELSGFSGSLSPCAGSSMSAKIEVNDSIATQAGFLAQPGNPGPSAVNVQGVSRNVNGAP 300
Query: 301 ELNIPSWWSQLKVPGLRPSMSVDDLVNHLGNCISEQITSVNPTLPSNEVPTKETLEEIAQ 360
ELNIPSWWSQLKVPGLRPSMSVDDLVNHLGNCISEQITSVNPTLPSNEVPTKETLEEIAQ
Sbjct: 301 ELNIPSWWSQLKVPGLRPSMSVDDLVNHLGNCISEQITSVNPTLPSNEVPTKETLEEIAQ 360
Query: 361 YLLGDAQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPNDSDSIGGDGTEGSDE 420
YLLGDAQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPNDSDSIGGDGTEGSDE
Sbjct: 361 YLLGDAQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPNDSDSIGGDGTEGSDE 420
Query: 421 EFSSAASTVKTTGPAQPPAMSRKDSFGDLLMNLPRIASLPQFLFKIPEDSEN 472
EFSSAASTVKTTGPAQPPAMSRKDSFGDLLMNLPRIASLPQFLFKIPEDSEN
Sbjct: 421 EFSSAASTVKTTGPAQPPAMSRKDSFGDLLMNLPRIASLPQFLFKIPEDSEN 472
>Os02g0793800 Conserved hypothetical protein
Length = 492
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 256/462 (55%), Positives = 310/462 (67%), Gaps = 43/462 (9%)
Query: 4 NVLDEPSPLGLRLRKSPSLLDLIQMRLSQANSTAGQSSADDCSSEPPKKKDLKSGTSTAG 63
++LD SPLGLRLRKSPSLL+LIQM+L+ N+ KK+D+KS + A
Sbjct: 61 HILDGSSPLGLRLRKSPSLLELIQMKLAMENT---------------KKEDIKSRSLIAS 105
Query: 64 ERLKASNFPANILRIGTWEYISRYEGDLVAKCYFAKHKLVWEVLEGGLKSKIEIQWSDIT 123
ER+KASNF A+ L+IGTWE S+YEGDLVAKCYFAKHKLVWEVL+ GLK KIEIQWSDI
Sbjct: 106 ERVKASNFAADFLKIGTWECTSQYEGDLVAKCYFAKHKLVWEVLDAGLKRKIEIQWSDII 165
Query: 124 ALKASCPENGQGTLDVVLARPPLFFKETDPQPRKHTLWQATSDFTGGQASMNRRHFLQCP 183
ALKA+CPENG GTLD+VLARPP FFKETDPQPRKHTLWQ SDFTGGQAS+ RRH LQC
Sbjct: 166 ALKATCPENGIGTLDLVLARPPTFFKETDPQPRKHTLWQVASDFTGGQASIKRRHILQCQ 225
Query: 184 SSLLSKNFEKLLQCDQRLNQLSQQPDIILDSPVFEPRC--SIFEDPVESKC-QGFTNLKD 240
SSLLSKNFEKL+QCDQRLN LS QP +I DSPVF P+ SIFE+P +SK GF+ L+
Sbjct: 226 SSLLSKNFEKLIQCDQRLNYLSLQPYMI-DSPVFRPKTEGSIFENPNKSKSYHGFSYLEG 284
Query: 241 EHE--LSGFSGSLSPCAGSSMSAKIEVNDSIATQAGFLAQPGNPGPSAVNVQGVSRNVNG 298
EHE LS + +SPC MS K + D IA Q ++P N G S V++Q V+
Sbjct: 285 EHESHLSKYIDHVSPCDFPLMSKKDGMKDDIANQQQSFSRPINWGASDVDLQ-----VDV 339
Query: 299 APELN--IPSWWSQLKVPGLRPSMSVDDLVNHLGNCISEQI-TSVNPTLPSNEVPTKETL 355
+ EL P+ SQ + S+S+DDL++HL +CI EQ NP+LP +E + E L
Sbjct: 340 SQELKSPHPNSLSQAR------SLSIDDLLSHLDDCIVEQKPAGNNPSLPISEASSNELL 393
Query: 356 EEIAQYLLGDAQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPNDSDSIGGDGT 415
E+I Q LL D+ PA SDE+ +MARV SL L+QKD P PK EPNDS G
Sbjct: 394 EKITQQLLSDSHVAPA--SDEKRVMARVGSLLSLLQKDAVPANLPKFEPNDS------GK 445
Query: 416 EGSDEEFSSAASTVKTTGPAQPPAMSRKDSFGDLLMNLPRIA 457
G E S+A + PP +SRKDS+ +LL NL I+
Sbjct: 446 IGVVEVGISSALDMGIANGTNPPGISRKDSYEELLSNLFNIS 487
>Os09g0128400 Conserved hypothetical protein
Length = 221
Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 119/174 (68%), Positives = 141/174 (81%), Gaps = 17/174 (9%)
Query: 3 HNVLDEPSPLGLRLRKSPSLLDLIQMRLSQANSTAGQSSADDCSSEPPKKKDLK-SGTST 61
H LDEPSPLGLRL+KSPSL+DLIQM+L QA K KD++ SGT++
Sbjct: 59 HGFLDEPSPLGLRLKKSPSLVDLIQMKLVQAG----------------KAKDVQHSGTAS 102
Query: 62 AGERLKASNFPANILRIGTWEYISRYEGDLVAKCYFAKHKLVWEVLEGGLKSKIEIQWSD 121
A E+LKASNFP ++LRIG+WE++SRYEGDLVAKCYFAKHKLVWEVL+GGLKSKIEIQWSD
Sbjct: 103 ASEKLKASNFPGSVLRIGSWEWVSRYEGDLVAKCYFAKHKLVWEVLDGGLKSKIEIQWSD 162
Query: 122 ITALKASCPENGQGTLDVVLARPPLFFKETDPQPRKHTLWQATSDFTGGQASMN 175
I A+K PEN G L++ L+R PLFF+ET+PQPRKHTLWQATSDFTGGQAS++
Sbjct: 163 ICAMKVVSPENEPGILEIALSRQPLFFRETNPQPRKHTLWQATSDFTGGQASIH 216
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.130 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,490,620
Number of extensions: 853372
Number of successful extensions: 2427
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2421
Number of HSP's successfully gapped: 3
Length of query: 472
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 367
Effective length of database: 11,553,331
Effective search space: 4240072477
Effective search space used: 4240072477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)