BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0167100 Os06g0167100|AK101686
(870 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0167100 Armadillo-like helical domain containing protein 1693 0.0
Os02g0805000 Adaptin, N-terminal domain containing protein 883 0.0
AK110215 601 e-171
Os01g0916200 Armadillo-like helical domain containing protein 217 2e-56
>Os06g0167100 Armadillo-like helical domain containing protein
Length = 870
Score = 1693 bits (4384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 828/870 (95%), Positives = 828/870 (95%)
Query: 1 MDLAINPFSSGTRLRDMIRAIRACKTAAEERAVVRRECAAIRAAISEGDQDYRHRNMAKL 60
MDLAINPFSSGTRLRDMIRAIRACKTAAEERAVVRRECAAIRAAISEGDQDYRHRNMAKL
Sbjct: 1 MDLAINPFSSGTRLRDMIRAIRACKTAAEERAVVRRECAAIRAAISEGDQDYRHRNMAKL 60
Query: 61 MFIHMLGYPTHFGQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNH 120
MFIHMLGYPTHFGQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNH
Sbjct: 61 MFIHMLGYPTHFGQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNH 120
Query: 121 SNQFIVGLALCALGNICSAEMARDLSPEVERLLQSREPNTKKKAALCSIRIVRKVPDLAE 180
SNQFIVGLALCALGNICSAEMARDLSPEVERLLQSREPNTKKKAALCSIRIVRKVPDLAE
Sbjct: 121 SNQFIVGLALCALGNICSAEMARDLSPEVERLLQSREPNTKKKAALCSIRIVRKVPDLAE 180
Query: 181 NFMGSAVSLLKEKHHGVLISAVQLCAELCKASKEALEYLRKNCLDGLVRILRDVSNSSYA 240
NFMGSAVSLLKEKHHGVLISAVQLCAELCKASKEALEYLRKNCLDGLVRILRDVSNSSYA
Sbjct: 181 NFMGSAVSLLKEKHHGVLISAVQLCAELCKASKEALEYLRKNCLDGLVRILRDVSNSSYA 240
Query: 241 PEYDIAGITDPFLHIRVLKLMRILGQGDADCSEFVNDILAQVATKTESNKNAGNAILYEC 300
PEYDIAGITDPFLHIRVLKLMRILGQGDADCSEFVNDILAQVATKTESNKNAGNAILYEC
Sbjct: 241 PEYDIAGITDPFLHIRVLKLMRILGQGDADCSEFVNDILAQVATKTESNKNAGNAILYEC 300
Query: 301 VETIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAMEVDTQAVQRHRATILE 360
VETIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAMEVDTQAVQRHRATILE
Sbjct: 301 VETIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAMEVDTQAVQRHRATILE 360
Query: 361 CVKDADVSIRKRALELVYLLVNDANAKSLTKELVDYLEVSDQDFKDDLTAKICSIVEKFS 420
CVKDADVSIRKRALELVYLLVNDANAKSLTKELVDYLEVSDQDFKDDLTAKICSIVEKFS
Sbjct: 361 CVKDADVSIRKRALELVYLLVNDANAKSLTKELVDYLEVSDQDFKDDLTAKICSIVEKFS 420
Query: 421 QDKLWYLDQMFKVLSLAGNYVKDDVWHALIVLISNASELQGYSVRSLYKALLACGEQESL 480
QDKLWYLDQMFKVLSLAGNYVKDDVWHALIVLISNASELQGYSVRSLYKALLACGEQESL
Sbjct: 421 QDKLWYLDQMFKVLSLAGNYVKDDVWHALIVLISNASELQGYSVRSLYKALLACGEQESL 480
Query: 481 VRVAVWCIGEYGEMLVNNVGMLDIEEPITVTESDAVDAVEVSLKRYSADVTTRAMCLVSL 540
VRVAVWCIGEYGEMLVNNVGMLDIEEPITVTESDAVDAVEVSLKRYSADVTTRAMCLVSL
Sbjct: 481 VRVAVWCIGEYGEMLVNNVGMLDIEEPITVTESDAVDAVEVSLKRYSADVTTRAMCLVSL 540
Query: 541 LKLSSRFPPTSERIKEIVAQNKGNTVLELQQRSIEFNSIIQRHQSIKSSLLERMPVIDEA 600
LKLSSRFPPTSERIKEIVAQNKGNTVLELQQRSIEFNSIIQRHQSIKSSLLERMPVIDEA
Sbjct: 541 LKLSSRFPPTSERIKEIVAQNKGNTVLELQQRSIEFNSIIQRHQSIKSSLLERMPVIDEA 600
Query: 601 SYLAKRAASTQATISSDKLAAAATPGSSLKLPNGVAKXXXXXXXXXXXXXXXXXXXXXXX 660
SYLAKRAASTQATISSDKLAAAATPGSSLKLPNGVAK
Sbjct: 601 SYLAKRAASTQATISSDKLAAAATPGSSLKLPNGVAKPPPAPLADLLDLSSDDAPATTSA 660
Query: 661 XXXXXNDFLQDLLGIGLTDTSTAGGAPSASTDILMDLLSIGSSPVQNGPPTVSNFSLPGQ 720
NDFLQDLLGIGLTDTSTAGGAPSASTDILMDLLSIGSSPVQNGPPTVSNFSLPGQ
Sbjct: 661 PTTAPNDFLQDLLGIGLTDTSTAGGAPSASTDILMDLLSIGSSPVQNGPPTVSNFSLPGQ 720
Query: 721 AETKVAPVTPQVVXXXXXXXXXXXXXXENTAYPPITAFQSAALKITFNFKKQSGKPQETT 780
AETKVAPVTPQVV ENTAYPPITAFQSAALKITFNFKKQSGKPQETT
Sbjct: 721 AETKVAPVTPQVVDLLDGLSSSTSLSDENTAYPPITAFQSAALKITFNFKKQSGKPQETT 780
Query: 781 IHASFTNLTSNTFTDFIFQAAVPKFIQLRLDPASSNTLPASGNDSVTQSLSVTNNQHGQK 840
IHASFTNLTSNTFTDFIFQAAVPKFIQLRLDPASSNTLPASGNDSVTQSLSVTNNQHGQK
Sbjct: 781 IHASFTNLTSNTFTDFIFQAAVPKFIQLRLDPASSNTLPASGNDSVTQSLSVTNNQHGQK 840
Query: 841 PLAMRIRITYKVNGEDRLEQGQINNFPAGL 870
PLAMRIRITYKVNGEDRLEQGQINNFPAGL
Sbjct: 841 PLAMRIRITYKVNGEDRLEQGQINNFPAGL 870
>Os02g0805000 Adaptin, N-terminal domain containing protein
Length = 489
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/476 (88%), Positives = 450/476 (94%)
Query: 2 DLAINPFSSGTRLRDMIRAIRACKTAAEERAVVRRECAAIRAAISEGDQDYRHRNMAKLM 61
D+A+ PFSSGTRLRDMIRAIRACKTAAEERAVVRRECA IR AI E Q+ RHRNMAKLM
Sbjct: 14 DIAMGPFSSGTRLRDMIRAIRACKTAAEERAVVRRECAEIREAIGENQQEIRHRNMAKLM 73
Query: 62 FIHMLGYPTHFGQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHS 121
FIHMLGYPTHFGQMECLKLIAAAG+PEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHS
Sbjct: 74 FIHMLGYPTHFGQMECLKLIAAAGYPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHS 133
Query: 122 NQFIVGLALCALGNICSAEMARDLSPEVERLLQSREPNTKKKAALCSIRIVRKVPDLAEN 181
NQFIVGLALCALGNICSAEMARDLSPEVERL++SR+ NTKKKAALC+IRIVRKVPDLAEN
Sbjct: 134 NQFIVGLALCALGNICSAEMARDLSPEVERLMRSRDVNTKKKAALCAIRIVRKVPDLAEN 193
Query: 182 FMGSAVSLLKEKHHGVLISAVQLCAELCKASKEALEYLRKNCLDGLVRILRDVSNSSYAP 241
FMG A SLLKEKHHG+LISAVQLC ELCKASK+ALEYLRKNC++GLVRILRDVSNSSYAP
Sbjct: 194 FMGLASSLLKEKHHGILISAVQLCTELCKASKDALEYLRKNCVEGLVRILRDVSNSSYAP 253
Query: 242 EYDIAGITDPFLHIRVLKLMRILGQGDADCSEFVNDILAQVATKTESNKNAGNAILYECV 301
EYD+AGI+DPFLHIRVLKLMRILGQGDADCSE++NDILAQVATK ESNKNA NAILYECV
Sbjct: 254 EYDVAGISDPFLHIRVLKLMRILGQGDADCSEYMNDILAQVATKNESNKNAANAILYECV 313
Query: 302 ETIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAMEVDTQAVQRHRATILEC 361
+TIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLM+A+ VDTQAVQRHR TILEC
Sbjct: 314 QTIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMRAITVDTQAVQRHRTTILEC 373
Query: 362 VKDADVSIRKRALELVYLLVNDANAKSLTKELVDYLEVSDQDFKDDLTAKICSIVEKFSQ 421
VKDAD SIRKRALELV+LLVND N K LTKELVDYL+ +D DFK+DLTAKICSIVEKFSQ
Sbjct: 374 VKDADASIRKRALELVFLLVNDTNVKPLTKELVDYLDSADPDFKEDLTAKICSIVEKFSQ 433
Query: 422 DKLWYLDQMFKVLSLAGNYVKDDVWHALIVLISNASELQGYSVRSLYKALLACGEQ 477
+KLWYLDQMFKVLSLAGN+VKDDVWHAL+V+ISNASELQGYSVR LY AL A +Q
Sbjct: 434 EKLWYLDQMFKVLSLAGNHVKDDVWHALVVVISNASELQGYSVRLLYMALQAFVDQ 489
>AK110215
Length = 884
Score = 601 bits (1549), Expect = e-171, Method: Compositional matrix adjust.
Identities = 291/584 (49%), Positives = 416/584 (71%), Gaps = 4/584 (0%)
Query: 14 LRDMIRAIRACKTAAEERAVVRRECAAIRAAISEGDQDYRHRNMAKLMFIHMLGYPTHFG 73
L+ +I+AIR+CKT A+ER+++++E A+IR A + D RH N+AKL++IHMLGYP HFG
Sbjct: 30 LKALIKAIRSCKTLADERSLIQKESASIRTAFKDEDPFARHNNIAKLLYIHMLGYPAHFG 89
Query: 74 QMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQFIVGLALCAL 133
Q+ECLKL+A F +KR+GYLG+MLLLDE EVL LVTN LK D+ HSN ++ GLALC
Sbjct: 90 QIECLKLVATPRFTDKRLGYLGIMLLLDENTEVLTLVTNGLKNDMEHSNMYVCGLALCTF 149
Query: 134 GNICSAEMARDLSPEVERLLQSREPNTKKKAALCSIRIVRKVPDLAENFMGSAVSLLKEK 193
NI S EM+RDL E+E+L+ S ++KAA+C++RIVRKVPDL ++F LL +K
Sbjct: 150 ANIASEEMSRDLCNEIEKLMGSSNTYIRRKAAICAMRIVRKVPDLIDHFADRTRQLLSDK 209
Query: 194 HHGVLISAVQLCAELCKASKEALEYLRKNCLDGLVRILRDVSNSSYAPEYDIAGITDPFL 253
+HGVL+ AV L E+ + +AL+ R+ + LV+ L+ + + Y+PE+D++GITDPFL
Sbjct: 210 NHGVLLCAVTLAIEIVRQDADALQDFRR-AVPLLVQHLKSLVTTGYSPEHDVSGITDPFL 268
Query: 254 HIRVLKLMRILGQGDADCSEFVNDILAQVATKTESNKNAGNAILYECVETIMGIEATSGL 313
+++L+L+R+LG+ +A SE +NDILAQVAT TE++KN GN+ILYE V TI+ I+A +GL
Sbjct: 269 QVKILRLLRVLGKENAQASEAMNDILAQVATNTEASKNVGNSILYETVLTILEIDADNGL 328
Query: 314 RVLAINILGRFLSNRDNNIRYVALNMLMKAMEVDTQAVQRHRATILECVKDADVSIRKRA 373
RV+AINILG+FLSNRDNNIRYVALN L K + +DT AVQRHR IL+C++D D+SIR+RA
Sbjct: 329 RVMAINILGKFLSNRDNNIRYVALNTLSKVVSMDTNAVQRHRNIILDCLRDGDISIRRRA 388
Query: 374 LELVYLLVNDANAKSLTKELVDYLEVSDQDFKDDLTAKICSIVEKFSQDKLWYLDQMFKV 433
LEL Y L+N++N + LT+EL+ +LEV+D +FK +T +IC E+F+ +K W++D + +V
Sbjct: 389 LELSYALINESNVRVLTRELLSFLEVADNEFKLGMTTQICLAAERFAPNKRWHIDTVLRV 448
Query: 434 LSLAGNYVKDDVWHALIVLISNASELQGYSVRSLYKALLACGEQESLVRVAVWCIGEYGE 493
L LAGNYV+D++ A I L+ + ELQ Y+V+ L+ AL QESL AVW IGE+G+
Sbjct: 449 LKLAGNYVRDEILSAFIRLVCHTPELQAYTVQKLFSALHHDFSQESLTLAAVWVIGEFGD 508
Query: 494 MLVNNVGMLDIEEPITVTESDAVDAVEVSLKRYSADVTTRAMCLVSLLKLSSRFPPTSE- 552
+LV D E V D VD + L + + L SL KL +R P +++
Sbjct: 509 VLVQGGNFEDEELVREVQPKDVVDLLSSVLDSPYVNGHIKQFVLTSLAKLHTRLPDSAQQ 568
Query: 553 -RIKEIVAQNKGNTVLELQQRSIEFNSIIQRHQSIKSSLLERMP 595
RI++I+ + + +E+QQRS+EF+S+++R I+ +LE MP
Sbjct: 569 NRIEQIIGSFESSVEVEIQQRSVEFSSLLRR-SDIREGVLESMP 611
>Os01g0916200 Armadillo-like helical domain containing protein
Length = 950
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 146/591 (24%), Positives = 279/591 (47%), Gaps = 50/591 (8%)
Query: 16 DMIRAIRACKTAAEERAVVRRECAAIRAAISEGDQDYRHRNMA----KLMFIHMLGYPTH 71
D++++I ++ AEE ++ RE ++ ++ D D R M +L++ MLG+
Sbjct: 27 DLVKSIGEARSKAEEDRIISRELDHLKRRLA--DPDVPRRKMKELLLRLVYAEMLGHDAS 84
Query: 72 FGQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQFIVGLALC 131
FG + +K+ P KR GYL + L LDER ++++LV N++++DL N +V AL
Sbjct: 85 FGHIHAVKMTHDESLPLKRTGYLAVSLFLDERHDLVILVVNTIQKDLRSDNYLVVCAALT 144
Query: 132 ALGNICSAEMARDLSPEVERLLQSREPNTKKKAALCSIRIVRKVPDLAENFMGSAVSLLK 191
A + E + P+V LL + +KKA + R ++ P + + + L
Sbjct: 145 AACRLIGEEAIPAVLPQVVELLAHPKEAVRKKAVMALHRFYQRSPSSVSHLVSNFRKRLC 204
Query: 192 EKHHGVLISAVQLCAELCKASKEALEYLR--KNCLDGLVRILRDVSNSSYAPEYDIAGIT 249
+ GV+ A LC LE K+ + V IL+ V+ YD +
Sbjct: 205 DNDPGVM------GATLCPLYDLILEDPNSYKDLVVSFVNILKQVAERRLPTSYDYHQMP 258
Query: 250 DPFLHIRVLKLMRILGQGDADCSEFVNDILAQVATKTESNKNAGNAILYECVETIMGIEA 309
PF+ I++LK++ +LG GD S + +L + K ++ N GNAILYEC+ I I
Sbjct: 259 APFIQIKLLKILAVLGSGDKQASGNMYMVLGDIFRKGDTASNIGNAILYECICCISSIFP 318
Query: 310 TSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAMEVDTQAVQRHRATILECVKDADVSI 369
+ + A +FL + +N++Y+ ++ L + ++++ + H+ +++C++D D ++
Sbjct: 319 NAKMLDAAAETTSKFLKSDSHNLKYMGIDALGRLIKINPDIAEEHQLAVIDCLEDPDDTL 378
Query: 370 RKRALELVYLLVNDANAKSLTKELVDYL-EVSDQDFKDDLTAKICSIVEKFSQDKLWYLD 428
+++ EL+Y + N + + +++Y+ ++D +K ++ ++ + E+F+ W++
Sbjct: 379 KRKTFELLYKMTKSTNVEVIVDRMIEYMINITDHHYKTEIASRCVELAEQFAPSNQWFIQ 438
Query: 429 QMFKVLSLAGNYVKDDVWHALIVLISNA---------SELQGYSVRSLYKALLACGEQES 479
M KV AG+ V V H L+ LI+ S+L+ +V S + + S
Sbjct: 439 TMNKVFEHAGDLVNIRVAHNLMRLIAEGFGEEDEGADSQLRSSAVDSYLRIVGEPKLPSS 498
Query: 480 LVRVAVWCIGEYGEMLVNNVGMLDIEEPITVTESDAVDAVEVSLKRYSADVTTRAMCLVS 539
+++ W +GEYG I + V E+ + D T RA + +
Sbjct: 499 FLQIICWVLGEYGTADGKYSASYIIGKLYDVAEA------------HPTDDTVRAYAISA 546
Query: 540 LLKLSS----------RFPPTSERIKEIVAQNKGNTVLELQQRSIEFNSII 580
+LK+ + P I E+ A + +LQQR+ E +++
Sbjct: 547 ILKIFAFEIALGRKIDMLPECQSLIDELSASHS----TDLQQRAYELQALL 593
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,137,336
Number of extensions: 938497
Number of successful extensions: 2594
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2584
Number of HSP's successfully gapped: 4
Length of query: 870
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 760
Effective length of database: 11,292,261
Effective search space: 8582118360
Effective search space used: 8582118360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)