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Os06g0167100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0136) R2 : 0.394
β1 : 0.75 (0.0498) R2dD : 0.313 R2D : 0.176
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.321 (0.029) R2dN8 : 0.218 R2N8 : 0.0811
σ : 0.255
deviance : 29.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.34 0.19 11.1 0.829 0.689 1.22 0.989 0.381 0.356 19.1 0.78 717 -- --
16.4 0.189 11.1 0.835 0.674 1.19 0.761 -- 0.353 19.2 0.78 717 -- --
17.24 0.193 11.1 0.825 0.639 1.12 -- -0.559 0.372 18.9 0.77 687 -- --
17.76 0.196 11.1 0.814 0.547 1.03 -- -- 0.356 19.7 0.78 736 -- --
17.88 0.197 11.1 0.842 -- 0.695 -- -0.088 0.404 -- 0.7736 1842 -- --
19.46 0.207 11.1 0.729 0.427 -- -0.15 -- 0.309 3.2 -- -- -- --
19.52 0.207 11.1 0.732 0.425 -- -- -- 0.31 3.09 -- -- -- --
17.65 0.196 11.1 0.844 -- 0.774 -- -- 0.396 -- 0.7702 1794 -- --
33.53 0.271 11.1 -- 0.399 0.0635 -- -- 0.229 3.67 0.78 736 -- --
29.83 0.255 11.1 0.75 -- -- -- -- 0.321 -- -- -- -- --
33.63 0.271 11.1 -- 0.439 -- -- -- 0.228 3.1 -- -- -- --
35.47 0.277 11.1 -- -- 0.614 -- -- 0.321 -- 6.654 1893 -- --
44.66 0.312 11.1 -- -- -- -- -- 0.238 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.10 radiation 1.0 720 < th dose dependent rect. 16 19
7 16.16 radiation 1.0 720 < th dose independent rect. 16 20
18 16.24 radiation 1.0 720 < th dose dependent sin 12 NA
24 16.27 temperature 25.0 720 < th dose independent rect. 18 18
38 16.33 radiation 1.0 720 < th dose independent sin 12 NA
64 16.42 temperature 25.0 270 < th dose dependent rect. 24 10
69 16.43 precipitation 0.1 720 < th dose independent rect. 19 23
72 16.43 precipitation 0.1 720 < th dose dependent rect. 19 23
76 16.44 temperature 15.0 30 > th dose dependent rect. 6 12
78 16.44 radiation 1.0 720 < th dose dependent rect. 5 23
83 16.45 temperature 10.0 30 > th dose dependent sin 3 NA
87 16.46 radiation 1.0 720 < th dose dependent rect. 5 16
89 16.47 radiation 1.0 720 > th dose independent sin 11 NA
100 16.49 radiation 1.0 720 < th dose independent rect. 5 23
105 16.50 radiation 1.0 720 < th dose independent rect. 20 23
108 16.50 radiation 1.0 720 < th dose dependent rect. 20 23
115 16.52 radiation 1.0 720 < th dose dependent rect. 5 14
120 16.54 temperature 25.0 720 < th dose independent sin 10 NA
133 16.56 radiation 1.0 720 > th dose independent rect. 17 16
134 16.56 radiation 1.0 720 > th dose independent rect. 17 23
135 16.56 radiation 1.0 720 < th dose dependent rect. 7 12
137 16.57 radiation 1.0 720 < th dose independent rect. 5 16
141 16.57 radiation 1.0 720 < th dose independent rect. 22 23
144 16.57 temperature 30.0 30 < th dose dependent sin 5 NA
145 16.57 radiation 1.0 720 < th dose dependent sin 23 NA
150 16.58 radiation 1.0 720 > th dose independent rect. 8 23
151 16.58 radiation 1.0 720 < th dose independent rect. 7 23
155 16.59 temperature 25.0 90 < th dose independent sin 7 NA
158 16.59 radiation 1.0 720 < th dose dependent rect. 7 23
162 16.60 radiation 1.0 720 < th dose dependent no NA NA
165 16.60 radiation 1.0 720 < th dose dependent rect. 3 23
174 16.62 radiation 1.0 720 < th dose independent no NA NA
178 16.62 temperature 10.0 720 > th dose dependent rect. 6 1
180 16.62 temperature 30.0 270 < th dose dependent rect. 24 13
186 16.63 radiation 1.0 720 < th dose dependent rect. 22 23
191 16.64 radiation 1.0 720 < th dose dependent rect. 9 23
194 16.65 radiation 1.0 720 > th dose independent rect. 13 23
212 16.67 radiation 1.0 720 > th dose independent rect. 5 14
230 16.67 radiation 1.0 720 < th dose dependent rect. 12 7
239 16.68 radiation 1.0 720 > th dose independent rect. 15 23
243 16.68 radiation 1.0 720 < th dose dependent rect. 14 5
248 16.69 radiation 1.0 720 > th dose independent no NA NA
289 16.69 radiation 1.0 720 > th dose independent rect. 10 23
295 16.69 radiation 1.0 720 < th dose independent rect. 3 23
302 16.70 radiation 1.0 720 > th dose independent rect. 17 14
306 16.70 radiation 1.0 720 < th dose dependent rect. 17 2
345 16.73 radiation 1.0 720 < th dose dependent rect. 1 23
347 16.74 radiation 1.0 720 < th dose independent rect. 1 23
355 16.75 temperature 25.0 720 < th dose independent rect. 18 10
377 16.78 radiation 1.0 720 < th dose independent rect. 17 2
391 16.80 radiation 1.0 720 > th dose independent sin 1 NA
414 16.81 temperature 30.0 720 < th dose dependent rect. 1 5
421 16.82 radiation 1.0 720 > th dose independent rect. 17 18
429 16.82 temperature 25.0 1440 > th dose dependent rect. 14 1
440 16.83 radiation 1.0 720 < th dose independent rect. 5 18
445 16.83 radiation 1.0 1440 < th dose dependent rect. 11 12
449 16.83 radiation 1.0 1440 < th dose dependent rect. 9 14
469 16.84 temperature 30.0 720 < th dose dependent rect. 23 7
473 16.84 radiation 1.0 1440 < th dose dependent rect. 13 10
499 16.84 radiation 1.0 720 < th dose dependent rect. 5 18
507 16.85 humidity 90.0 90 < th dose independent rect. 5 13
549 16.86 radiation 1.0 1440 < th dose dependent sin 18 NA
568 16.87 temperature 20.0 270 > th dose dependent rect. 23 10
587 16.88 temperature 20.0 10 > th dose dependent rect. 24 12
596 16.89 humidity 90.0 1440 < th dose independent rect. 20 1
597 16.89 radiation 1.0 720 < th dose independent rect. 7 12
600 16.89 precipitation 0.1 720 < th dose independent rect. 19 16
612 16.89 precipitation 0.1 720 < th dose dependent rect. 19 16
615 16.90 radiation 1.0 720 < th dose independent sin 22 NA
635 16.91 radiation 1.0 720 > th dose independent rect. 15 20
645 16.91 temperature 10.0 720 > th dose dependent rect. 23 10
658 16.92 humidity 90.0 720 > th dose dependent rect. 20 1
686 16.94 humidity 90.0 10 < th dose independent sin 0 NA
704 16.95 humidity 90.0 1440 > th dose independent rect. 20 1
713 16.95 temperature 25.0 1440 > th dose dependent rect. 13 13
761 16.97 temperature 25.0 1440 > th dose independent rect. 17 9
764 16.97 temperature 25.0 270 < th dose independent rect. 23 14
775 16.97 temperature 20.0 30 > th dose dependent rect. 24 18
787 16.98 humidity 50.0 720 > th dose dependent rect. 18 1
800 16.99 temperature 30.0 1440 < th dose independent rect. 14 1
841 17.00 humidity 90.0 720 > th dose dependent rect. 18 18
846 17.01 radiation 1.0 1440 < th dose independent rect. 14 10
851 17.01 radiation 1.0 720 > th dose independent rect. 13 18
883 17.02 radiation 1.0 720 < th dose independent rect. 14 5
903 17.02 radiation 1.0 720 < th dose independent rect. 1 18
912 17.02 temperature 20.0 720 > th dose dependent rect. 23 8
915 17.02 temperature 30.0 30 < th dose dependent rect. 3 12
932 17.02 humidity 90.0 270 > th dose dependent rect. 4 23
972 17.04 radiation 1.0 1440 < th dose independent sin 17 NA
978 17.04 radiation 1.0 1440 < th dose independent rect. 11 9