BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0161900 Os06g0161900|AK106234
         (273 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0161900  Protein of unknown function DUF569 family protein   489   e-139
Os06g0161800  Protein of unknown function DUF569 family protein   164   5e-41
Os06g0161100                                                      127   6e-30

>Os06g0161900 Protein of unknown function DUF569 family protein
          Length = 273

 Score =  489 bits (1259), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/273 (90%), Positives = 246/273 (90%)

Query: 1   MEQFHDGHHVWLRSRAQGTYLRADDDGRGVSMGQGRASVHAAWTVHTHHLNAGDVDILML 60
           MEQFHDGHHVWLRSRAQGTYLRADDDGRGVSMGQGRASVHAAWTVHTHHLNAGDVDILML
Sbjct: 1   MEQFHDGHHVWLRSRAQGTYLRADDDGRGVSMGQGRASVHAAWTVHTHHLNAGDVDILML 60

Query: 61  HSAANGRYLATGLGWTRRRLLSGNRASIILRDLDQEVFPPACWFAIRSGWGDDVLLRHCS 120
           HSAANGRYLATGLGWTRRRLLSGNRASIILRDLDQEVFPPACWFAIRSGWGDDVLLRHCS
Sbjct: 61  HSAANGRYLATGLGWTRRRLLSGNRASIILRDLDQEVFPPACWFAIRSGWGDDVLLRHCS 120

Query: 121 WRFLRADDRKWNWNRNGTGVIADMIDGRRLARWQWVVEAXXXXXXXXXXXXXXXSXXXXX 180
           WRFLRADDRKWNWNRNGTGVIADMIDGRRLARWQWVVEA               S     
Sbjct: 121 WRFLRADDRKWNWNRNGTGVIADMIDGRRLARWQWVVEAIPPRNSIPRPPNPSPSFGFFA 180

Query: 181 XXXXXXXLTHNDLQWVWIWFTGRSALHLWNQLSRRMGFEPDPNSTMCVRAGTYGRLTPLV 240
                  LTHNDLQWVWIWFTGRSALHLWNQLSRRMGFEPDPNSTMCVRAGTYGRLTPLV
Sbjct: 181 RRIIFRRLTHNDLQWVWIWFTGRSALHLWNQLSRRMGFEPDPNSTMCVRAGTYGRLTPLV 240

Query: 241 TDLPRNNATMVIFVLPPESLAGLGLTCPNVHAA 273
           TDLPRNNATMVIFVLPPESLAGLGLTCPNVHAA
Sbjct: 241 TDLPRNNATMVIFVLPPESLAGLGLTCPNVHAA 273



>Os06g0161800 Protein of unknown function DUF569 family protein
          Length = 274

 Score =  164 bits (416), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 124/285 (43%), Positives = 145/285 (50%), Gaps = 25/285 (8%)

Query: 1   MEQFHDGHHVWLRSRAQGTYLRAD-DDGRGVSMGQGRASVHAAWTVHT-HHLNAGDVDIL 58
           ME+F D HHVWLRSR  G YL AD  DG  V +   RA+  AAW VH  HH    D  +L
Sbjct: 1   MERFQDRHHVWLRSREHGLYLHADLADGSSVYLHPYRATARAAWAVHVLHHF---DGRML 57

Query: 59  MLHSAANGRYLA-TGLGWT----RRRLLSGNRASIILRDLDQEVFPPACWFAIRSGWGDD 113
           MLHSAANGRYLA T   W     R  L  GNR  + LRDLD+     A WF I S  GD 
Sbjct: 58  MLHSAANGRYLAATTSPWAATAARFGLGGGNR--VTLRDLDRLPMFAAGWFPIVSASGD- 114

Query: 114 VLLRHCSWRFLRADDRKWNWNRNGTGVIADMIDGRRLARWQWVVEAXXXXXXX------X 167
           VLL H S RFLRA DR      +G GV  ++ D RR     WVVEA              
Sbjct: 115 VLLGHASDRFLRAIDRG-----DGNGVTVEVSDSRR-PNTPWVVEAIPPIESIPRLPHLV 168

Query: 168 XXXXXXXSXXXXXXXXXXXXLTHNDLQWVWIWFTGRSALHLWNQLSRRMGFEPDPNSTMC 227
                  +             T   + W    FTGRS  +L  +L+RR+ F    +  MC
Sbjct: 169 GIGHIARAIRFVRAERASTDGTFPHVAWACFEFTGRSLFNLRTELARRLNFAVVSDVIMC 228

Query: 228 VRAGTYGRLTPLVTDLPRNNATMVIFVLPPESLAGLGLTCPNVHA 272
           VRAG +GRLTPL+TDLP NN TM I V+   ++    L  PNV A
Sbjct: 229 VRAGLFGRLTPLITDLPPNNVTMEIIVVTAGTIDANELRFPNVGA 273



>Os06g0161100 
          Length = 360

 Score =  127 bits (320), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 123/261 (47%), Gaps = 25/261 (9%)

Query: 1   MEQFHDGHHVWLRSRAQGTYLRADDDGRGVSMGQGRASVHAAWTVHTHHLNAGDVD-ILM 59
           MEQFHD  HV LRSR  GTYL AD+DGRGVS+    AS+ A WTV   HL  G     L+
Sbjct: 1   MEQFHDRDHVRLRSRVHGTYLHADEDGRGVSLQPTGASLTAVWTV---HLEGGSPQRRLL 57

Query: 60  LHSAANGRYLATGLGWTRRRLLSGNRASII-LRDLDQEVFPPACWFAIRSGWGDDVLLRH 118
           LHSAA GRYLA   G      L G+R ++I L  LD E      W A+R+  GDDVLLRH
Sbjct: 58  LHSAAYGRYLA-ATGKPGPSGLRGHRVALINLDRLDDESV---SWEAVRTAKGDDVLLRH 113

Query: 119 CSWRFLRADDRKWNWNRNGTGVIADMIDGRRLARWQWVVEAXXXXXXXXXXXXXXXSXXX 178
            + R LRA+        +G G   D    R L     VVEA                   
Sbjct: 114 ATGRNLRAN--------HGAGATVDDRYSRMLLWVDQVVEAIPSADSVPRPPPISRRQDG 165

Query: 179 XXXXXXXXXLTHND----LQWVWIWFTGRSALHLWNQLSRRMGFEPDPNSTMCVRAGTYG 234
                        +      W    FTGRS   L  +++ R G      +  CV+AG YG
Sbjct: 166 PEIRTIRFVPAAPNGTIAEDWRTFQFTGRSVQRLKEEITSRAG----EATQYCVQAGRYG 221

Query: 235 RLTPLVTDLPRNNATMVIFVL 255
           RL PL  +LP N  T+ I ++
Sbjct: 222 RLIPLTHELPHNTETIDIIIM 242



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.137    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,438,931
Number of extensions: 445993
Number of successful extensions: 1195
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1189
Number of HSP's successfully gapped: 3
Length of query: 273
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 174
Effective length of database: 11,866,615
Effective search space: 2064791010
Effective search space used: 2064791010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)