BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0152800 Os06g0152800|AK099578
         (394 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0152800  Conserved hypothetical protein                      703   0.0  
Os01g0729900  Conserved hypothetical protein                      378   e-105
Os05g0530300  Conserved hypothetical protein                       70   3e-12

>Os06g0152800 Conserved hypothetical protein
          Length = 394

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/380 (91%), Positives = 349/380 (91%)

Query: 15  FIPLPQPPQKEQLSGVAAAVLDAGGRLGRAVGDVFRRLRIDEGLDVALAQRHRRNGGSRI 74
           FIPLPQPPQKEQLSGVAAAVLDAGGRLGRAVGDVFRRLRIDEGLDVALAQRHRRNGGSRI
Sbjct: 15  FIPLPQPPQKEQLSGVAAAVLDAGGRLGRAVGDVFRRLRIDEGLDVALAQRHRRNGGSRI 74

Query: 75  XXXXXXVDARVSKDSXXXXXXXXXXXXXSGRFARSQGSMNLSATYDSRTSDVESSVVARG 134
                 VDARVSKDS             SGRFARSQGSMNLSATYDSRTSDVESSVVARG
Sbjct: 75  AAAAAAVDARVSKDSGGGGVAGHDPVGVSGRFARSQGSMNLSATYDSRTSDVESSVVARG 134

Query: 135 DLWRXXXXXXXXXXXXPPLFMVQLGPVLFVRDTTLLFPVHLSKRHLIWYGFERKNGVHSV 194
           DLWR            PPLFMVQLGPVLFVRDTTLLFPVHLSKRHLIWYGFERKNGVHSV
Sbjct: 135 DLWRAEASHSSAAAAAPPLFMVQLGPVLFVRDTTLLFPVHLSKRHLIWYGFERKNGVHSV 194

Query: 195 CPAYWSAHRRWFFMSMICLNPFTCSFMDMQFPNGQLRYVAGDGFTTRAFLPLCRGIFQAH 254
           CPAYWSAHRRWFFMSMICLNPFTCSFMDMQFPNGQLRYVAGDGFTTRAFLPLCRGIFQAH
Sbjct: 195 CPAYWSAHRRWFFMSMICLNPFTCSFMDMQFPNGQLRYVAGDGFTTRAFLPLCRGIFQAH 254

Query: 255 AKFPGEKKFSYSFKNRSGGSITPMVQWPDKSFSLGTIQTLSWKRCGLMLQPALQFSICPT 314
           AKFPGEKKFSYSFKNRSGGSITPMVQWPDKSFSLGTIQTLSWKRCGLMLQPALQFSICPT
Sbjct: 255 AKFPGEKKFSYSFKNRSGGSITPMVQWPDKSFSLGTIQTLSWKRCGLMLQPALQFSICPT 314

Query: 315 FGGSRPGLSMELIHSVNENAGVVCGYSHTASPSAYASISIGRSKLNGSAASSGLVLRVDA 374
           FGGSRPGLSMELIHSVNENAGVVCGYSHTASPSAYASISIGRSKLNGSAASSGLVLRVDA
Sbjct: 315 FGGSRPGLSMELIHSVNENAGVVCGYSHTASPSAYASISIGRSKLNGSAASSGLVLRVDA 374

Query: 375 PLHSFGRPWFSIQMNSGLEF 394
           PLHSFGRPWFSIQMNSGLEF
Sbjct: 375 PLHSFGRPWFSIQMNSGLEF 394



>Os01g0729900 Conserved hypothetical protein
          Length = 488

 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 169/293 (57%), Positives = 220/293 (75%), Gaps = 2/293 (0%)

Query: 104 GRFARSQGSMNLSATYDSRTSDVESSVVARGDLWRXXXX--XXXXXXXXPPLFMVQLGPV 161
           G F +S+G++N+SA+Y++R  D+ESSVVARGDLWR               PL++VQLGP+
Sbjct: 196 GNFKKSKGTVNVSASYNTRNHDIESSVVARGDLWRLEASRSSSTSGNDSSPLYLVQLGPL 255

Query: 162 LFVRDTTLLFPVHLSKRHLIWYGFERKNGVHSVCPAYWSAHRRWFFMSMICLNPFTCSFM 221
           LFVRD+TLL PVHLSK+HL+WYG++RKNGVHS+CPA+WS HR+W  MSM+CLNP  CSFM
Sbjct: 256 LFVRDSTLLLPVHLSKQHLLWYGYDRKNGVHSLCPAFWSKHRKWLMMSMVCLNPVACSFM 315

Query: 222 DMQFPNGQLRYVAGDGFTTRAFLPLCRGIFQAHAKFPGEKKFSYSFKNRSGGSITPMVQW 281
           D+QFPNGQL YVAG+G T   FLPL  G+ QAH K+PGE + S+S KN+ G   TPM QW
Sbjct: 316 DLQFPNGQLTYVAGEGITASGFLPLFGGLLQAHGKYPGETRVSFSCKNKQGTRFTPMFQW 375

Query: 282 PDKSFSLGTIQTLSWKRCGLMLQPALQFSICPTFGGSRPGLSMELIHSVNENAGVVCGYS 341
           PDKS S G  Q L+WKR GLM++P++Q S+CPTFGG+ PG+  E+IHS+ E   V+CG S
Sbjct: 376 PDKSLSFGVTQALAWKRSGLMVRPSVQVSLCPTFGGNDPGVRAEVIHSLKEELNVMCGLS 435

Query: 342 HTASPSAYASISIGRSKLNGSAASSGLVLRVDAPLHSFGRPWFSIQMNSGLEF 394
            +  PSA+ ++SIGRSK NG   SSG+V+ ++ PL++ GRP  S+Q+N G E 
Sbjct: 436 CSRHPSAFTALSIGRSKWNGQMGSSGVVVTLETPLNNIGRPSLSVQLNGGFEI 488



>Os05g0530300 Conserved hypothetical protein
          Length = 65

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 36/50 (72%)

Query: 219 SFMDMQFPNGQLRYVAGDGFTTRAFLPLCRGIFQAHAKFPGEKKFSYSFK 268
           SFMD+QFPNGQL YVAG+G T   F P   G+ QAH K PGE + S+SFK
Sbjct: 7   SFMDVQFPNGQLTYVAGEGITASGFFPFFGGLLQAHGKCPGETRLSFSFK 56



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,019,952
Number of extensions: 545337
Number of successful extensions: 1352
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1351
Number of HSP's successfully gapped: 3
Length of query: 394
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 291
Effective length of database: 11,657,759
Effective search space: 3392407869
Effective search space used: 3392407869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 157 (65.1 bits)