Os05g0530300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0530300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.37 | 0.217 | 14.7 | 0.321 | 0.592 | -0.753 | 0.426 | 0.386 | 0.411 | 5.08 | 14.57 | 541 | -- | -- |
| 21.48 | 0.216 | 14.7 | 0.266 | 0.598 | -0.721 | 0.376 | -- | 0.394 | 5.02 | 15.52 | 555 | -- | -- |
| 21.77 | 0.217 | 14.7 | 0.287 | 0.588 | -0.77 | -- | 0.15 | 0.405 | 4.96 | 14.8 | 547 | -- | -- |
| 21.78 | 0.217 | 14.7 | 0.265 | 0.589 | -0.76 | -- | -- | 0.395 | 4.97 | 15 | 550 | -- | -- |
| 33.84 | 0.271 | 14.7 | 0.415 | -- | -1.31 | -- | 0.171 | 0.489 | -- | 11.9 | 369 | -- | -- |
| 28.02 | 0.248 | 14.7 | 0.0793 | 0.769 | -- | 0.532 | -- | 0.281 | 5.54 | -- | -- | -- | -- |
| 28.71 | 0.251 | 14.7 | 0.0812 | 0.772 | -- | -- | -- | 0.279 | 5.5 | -- | -- | -- | -- |
| 33.66 | 0.27 | 14.7 | 0.361 | -- | -1.22 | -- | -- | 0.471 | -- | 16.35 | 369 | -- | -- |
| 23.36 | 0.225 | 14.7 | -- | 0.619 | -0.618 | -- | -- | 0.35 | 5.07 | 15.79 | 540 | -- | -- |
| 59.75 | 0.361 | 14.7 | 0.107 | -- | -- | -- | -- | 0.297 | -- | -- | -- | -- | -- |
| 28.89 | 0.251 | 14.7 | -- | 0.774 | -- | -- | -- | 0.27 | 5.5 | -- | -- | -- | -- |
| 31.6 | 0.262 | 14.7 | -- | -- | -0.979 | -- | -- | 0.349 | -- | 24.67 | 381 | -- | -- |
| 60.05 | 0.362 | 14.7 | -- | -- | -- | -- | -- | 0.286 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.95 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 47 | 19.36 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 65 | 19.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 159 | 20.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 160 | 20.32 | temperature | 15 | 720 | > th | dose dependent | sin | 2 | NA |
| 192 | 20.46 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 196 | 20.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 216 | 20.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 223 | 20.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 228 | 20.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 248 | 20.65 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 370 | 20.88 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 391 | 20.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 394 | 20.92 | temperature | 30 | 270 | < th | dose dependent | sin | 21 | NA |
| 395 | 20.92 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 416 | 20.93 | radiation | 1 | 270 | > th | dose independent | sin | 14 | NA |
| 423 | 20.94 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 7 |
| 425 | 20.94 | radiation | 1 | 270 | < th | dose dependent | sin | 14 | NA |
| 439 | 20.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 445 | 20.97 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 458 | 20.97 | temperature | 20 | 270 | > th | dose dependent | sin | 21 | NA |
| 459 | 20.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 475 | 21.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 511 | 21.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 530 | 21.04 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 546 | 21.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 560 | 21.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 595 | 21.10 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 601 | 21.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 606 | 21.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 9 |
| 615 | 21.11 | radiation | 1 | 270 | < th | dose independent | sin | 14 | NA |
| 725 | 21.19 | humidity | 70 | 270 | > th | dose independent | rect. | 9 | 16 |
| 738 | 21.20 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 739 | 21.20 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 758 | 21.21 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 907 | 21.30 | humidity | 60 | 270 | > th | dose dependent | rect. | 9 | 15 |
| 912 | 21.31 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 913 | 21.31 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 940 | 21.33 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 988 | 21.36 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |