Os01g0729900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0729900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.82 | 0.363 | 12.2 | 0.449 | 1.11 | -0.695 | 0.0094 | -0.016 | 0.406 | 20.1 | 75 | 931 | -- | -- |
| 59.52 | 0.359 | 12.2 | 0.451 | 1.19 | -0.742 | 0.0265 | -- | 0.398 | 19.9 | 75 | 844 | -- | -- |
| 59.53 | 0.359 | 12.2 | 0.452 | 1.19 | -0.737 | -- | 0.0796 | 0.399 | 19.9 | 74.29 | 844 | -- | -- |
| 59.53 | 0.359 | 12.2 | 0.452 | 1.19 | -0.743 | -- | -- | 0.399 | 19.9 | 74.96 | 844 | -- | -- |
| 100.93 | 0.468 | 12.1 | 0.444 | -- | -0.46 | -- | 0.387 | 0.438 | -- | 74.3 | 2830 | -- | -- |
| 69.62 | 0.391 | 12.2 | 0.374 | 0.821 | -- | 0.0298 | -- | 0.354 | 19.4 | -- | -- | -- | -- |
| 69.62 | 0.391 | 12.2 | 0.373 | 0.821 | -- | -- | -- | 0.354 | 19.4 | -- | -- | -- | -- |
| 100.75 | 0.467 | 12.1 | 0.389 | -- | -0.462 | -- | -- | 0.403 | -- | 75.43 | 2846 | -- | -- |
| 64.83 | 0.375 | 12.2 | -- | 1.15 | -0.675 | -- | -- | 0.345 | 19.9 | 74.98 | 843 | -- | -- |
| 105.54 | 0.48 | 12.1 | 0.36 | -- | -- | -- | -- | 0.341 | -- | -- | -- | -- | -- |
| 73.29 | 0.4 | 12.2 | -- | 0.817 | -- | -- | -- | 0.312 | 19.5 | -- | -- | -- | -- |
| 104.72 | 0.477 | 12.1 | -- | -- | -0.434 | -- | -- | 0.355 | -- | 75.44 | 2833 | -- | -- |
| 108.97 | 0.487 | 12.2 | -- | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.02 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 2 | 55.15 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 3 | 55.52 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 12 | 56.30 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 19 | 56.54 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 23 | 56.74 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 82 | 57.79 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 86 | 57.83 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 87 | 57.83 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 92 | 57.89 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 93 | 57.90 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 10 |
| 114 | 58.12 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 118 | 58.15 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 14 |
| 130 | 58.25 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 132 | 58.30 | humidity | 80.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 174 | 58.57 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 187 | 58.64 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 8 |
| 190 | 58.67 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 10 |
| 201 | 58.67 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 215 | 58.75 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 6 |
| 219 | 58.78 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 223 | 58.78 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 233 | 58.84 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 235 | 58.84 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 249 | 58.88 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 264 | 58.91 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 21 | 17 |
| 290 | 58.99 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 22 |
| 323 | 59.13 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 7 |
| 329 | 59.15 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 342 | 59.18 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 349 | 59.19 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 353 | 59.20 | atmosphere | 995.0 | 43200 | > th | dose independent | no | NA | NA |
| 367 | 59.21 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 427 | 59.34 | temperature | 25.0 | 90 | < th | dose independent | rect. | 12 | 19 |
| 433 | 59.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 435 | 59.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 460 | 59.41 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 5 | NA |
| 471 | 59.43 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 483 | 59.45 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 13 | 20 |
| 495 | 59.50 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 499 | 59.52 | humidity | 80.0 | 720 | > th | dose independent | sin | 22 | NA |
| 500 | 59.52 | atmosphere | 995.0 | 43200 | < th | dose independent | no | NA | NA |
| 505 | 59.52 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 532 | 59.57 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 538 | 59.59 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 571 | 59.64 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 593 | 59.68 | radiation | 1.0 | 720 | < th | dose independent | sin | 19 | NA |
| 638 | 59.76 | radiation | 1.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 663 | 59.80 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 675 | 59.81 | humidity | 70.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 677 | 59.81 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 691 | 59.83 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 697 | 59.85 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 713 | 59.85 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 766 | 59.94 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 770 | 59.94 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 775 | 59.95 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 778 | 59.95 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 791 | 59.97 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 866 | 60.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 902 | 60.10 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 931 | 60.13 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 945 | 60.15 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 957 | 60.16 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 987 | 60.18 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 989 | 60.18 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 991 | 60.18 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |